about
Characterizing the state of the art in the computational assignment of gene function: lessons from the first critical assessment of functional annotation (CAFA)An expanded evaluation of protein function prediction methods shows an improvement in accuracyA genome-wide RNAi screen draws a genetic framework for transposon control and primary piRNA biogenesis in DrosophilaA methodology for the analysis of differential coexpression across the human lifespan.Gene function analysis in complex data sets using ErmineJ.De novo mutations in schizophrenia implicate chromatin remodeling and support a genetic overlap with autism and intellectual disabilityThe impact of multifunctional genes on "guilt by association" analysisAcquired dependence of acute myeloid leukemia on the DEAD-box RNA helicase DDX5."Guilt by association" is the exception rather than the rule in gene networks.KCTD8 gene and brain growth in adverse intrauterine environment: a genome-wide association study.Diverse epigenetic strategies interact to control epidermal differentiation.Gemma: a resource for the reuse, sharing and meta-analysis of expression profiling data.Meta-analysis of gene coexpression networks in the post-mortem prefrontal cortex of patients with schizophrenia and unaffected controlsThe role of indirect connections in gene networks in predicting functionGenome-wide expression profiling of schizophrenia using a large combined cohort.AuPairWise: A Method to Estimate RNA-Seq Replicability through Co-expression.Ligand Similarity Complements Sequence, Physical Interaction, and Co-Expression for Gene Function Prediction.FTO, obesity and the adolescent brain.Gene-specific patterns of expression variation across organs and speciesProgress and challenges in the computational prediction of gene function using networks: 2012-2013 updateExploiting single-cell expression to characterize co-expression replicabilityAssessing identity, redundancy and confounds in Gene Ontology annotations over time.Bias tradeoffs in the creation and analysis of protein-protein interaction networksStrength of functional signature correlates with effect size in autism.EGAD: ultra-fast functional analysis of gene networks.Positive and negative forms of replicability in gene network analysis.Spontaneous rhythmic field potentials of isolated mouse hippocampal-subicular-entorhinal cortices in vitro.Guidance for RNA-seq co-expression network construction and analysis: safety in numbers.Progress and challenges in the computational prediction of gene function using networks.Spatial coherence and stationarity of local field potentials in an isolated whole hippocampal preparation in vitro.Measuring the wisdom of the crowds in network-based gene function inference.An in vitro model of hippocampal sharp waves: regional initiation and intracellular correlates.Controlling for spatial variability in single site recordings in an in vitro hippocampal preparation with a spontaneous rhythm.Size does matter: generation of intrinsic network rhythms in thick mouse hippocampal slices.Transcriptional Architecture of Synaptic Communication Delineates GABAergic Neuron Identity.Single-cell transcriptomics of the developing lateral geniculate nucleus reveals insights into circuit assembly and refinement.Repeated hypoxic episodes induce seizures and alter hippocampal network activities in mice.Using predictive specificity to determine when gene set analysis is biologically meaningful.Characterizing the replicability of cell types defined by single cell RNA-sequencing data using MetaNeighbor.EGAD: Ultra-fast functional analysis of gene networks
P50
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P50
description
hulumtues
@sq
researcher
@en
wetenschapper
@nl
հետազոտող
@hy
name
Jesse Gillis
@ast
Jesse Gillis
@en
Jesse Gillis
@es
Jesse Gillis
@nl
Jesse Gillis
@sl
type
label
Jesse Gillis
@ast
Jesse Gillis
@en
Jesse Gillis
@es
Jesse Gillis
@nl
Jesse Gillis
@sl
prefLabel
Jesse Gillis
@ast
Jesse Gillis
@en
Jesse Gillis
@es
Jesse Gillis
@nl
Jesse Gillis
@sl
P106
P1153
35578536500
P21
P2456
P31
P496
0000-0002-0936-9774