Local and global effects of strong DNA bending induced during molecular dynamics simulations.
about
DNA minicircles clarify the specific role of DNA structure on retroviral integrationLabel-free, atomic force microscopy-based mapping of DNA intrinsic curvature for the nanoscale comparative analysis of bent duplexes.Stretched DNA investigated using molecular-dynamics and quantum-mechanical calculations.A measure of bending in nucleic acids structures applied to A-tract DNA.Toward a consensus view of duplex RNA flexibilityDNA curvature and flexibility in vitro and in vivo.Single-Walled Carbon Nanotubes Modulate the B- to A-DNA TransitionWorking the kinks out of nucleosomal DNASequence-specific recognition of cancer drug-DNA adducts by HMGB1a repair proteinTwist-induced defects of the P-SSP7 genome revealed by modeling the cryo-EM density.Revisiting the Anomalous Bending Elasticity of Sharply Bent DNAExtreme bendability of DNA less than 100 base pairs long revealed by single-molecule cyclization.Bullied no more: when and how DNA shoves proteins around.Long-range correlations in the mechanics of small DNA circles under topological stress revealed by multi-scale simulationSymmetric curvature descriptors for label-free analysis of DNA.Strong bending of the DNA double helix.Predicting the effects of basepair mutations in DNA-protein complexes by thermodynamic integration.Dynamic Release of Bending Stress in Short dsDNA by Formation of a Kink and ForksStructure and dynamics of DNA loops on nucleosomes studied with atomistic, microsecond-scale molecular dynamics.Base damage, local sequence context and TP53 mutation hotspots: a molecular dynamics study of benzo[a]pyrene induced DNA distortion and mutabilityMechanical properties of symmetric and asymmetric DNA A-tracts: implications for looping and nucleosome positioning.Indirect DNA Sequence Recognition and Its Impact on Nuclease Cleavage Activity.DNA bending propensity in the presence of base mismatches: implications for DNA repair.The energetic contribution of induced electrostatic asymmetry to DNA bending by a site-specific protein.Simulation of DNA Supercoil RelaxationAtomistic simulations reveal bubbles, kinks and wrinkles in supercoiled DNA.Conformational rearrangement of 1,2-d(GG) intrastrand cis-diammineplatinum crosslinked DNA is driven by counter-ion penetration within the minor groove of the modified site.Role of Macromolecular Crowding on the Intracellular Diffusion of DNA Binding Proteins.Probing the role of intercalating protein sidechains for kink formation in DNA.Three new active members of the I-OnuI family of homing endonucleases.DNA conformational flexibility study using phosphate backbone neutralization model.Recent progress on the mechanics of sharply bent DNAIn situ evaluation of anticancer drug methotrexate–DNA interaction using a DNA-electrochemical biosensor and AFM characterization
P2860
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P2860
Local and global effects of strong DNA bending induced during molecular dynamics simulations.
description
2009 nî lūn-bûn
@nan
2009年の論文
@ja
2009年学术文章
@wuu
2009年学术文章
@zh-cn
2009年学术文章
@zh-hans
2009年学术文章
@zh-my
2009年学术文章
@zh-sg
2009年學術文章
@yue
2009年學術文章
@zh
2009年學術文章
@zh-hant
name
Local and global effects of st ...... olecular dynamics simulations.
@en
type
label
Local and global effects of st ...... olecular dynamics simulations.
@en
prefLabel
Local and global effects of st ...... olecular dynamics simulations.
@en
P2093
P2860
P356
P1476
Local and global effects of st ...... olecular dynamics simulations.
@en
P2093
Jeremy Curuksu
Krystyna Zakrzewska
Richard Lavery
P2860
P304
P356
10.1093/NAR/GKP234
P577
2009-04-20T00:00:00Z