An evaluation of analysis pipelines for DNA methylation profiling using the Illumina HumanMethylation450 BeadChip platform.
about
Lessons learned in the analysis of high-dimensional data in vaccinomicsEstablishing an analytic pipeline for genome-wide DNA methylationDNA Methylation Analysis: Choosing the Right MethodBase resolution methylome profiling: considerations in platform selection, data preprocessing and analysisEpigenetic epidemiology: promises for public health researchGuidelines for the design, analysis and interpretation of 'omics' data: focus on human endometriumReview of processing and analysis methods for DNA methylation array dataTumor hypomethylation at 6p21.3 associates with longer time to recurrence of high-grade serous epithelial ovarian cancerQuality control and statistical modeling for environmental epigenetics: a study on in utero lead exposure and DNA methylation at birthEpigenomics and allergic diseaseConsiderations for normalization of DNA methylation data by Illumina 450K BeadChip assay in population studies.Exploring the molecular causes of hepatitis B virus vaccination response: an approach with epigenomic and transcriptomic data.Analysis pipelines and packages for Infinium HumanMethylation450 BeadChip (450k) dataBetween-array normalization for 450K data.Identification of functionally methylated regions based on discriminant analysis through integrating methylation and gene expression data.Removing unwanted variation in a differential methylation analysis of Illumina HumanMethylation450 array data.A systematic study of normalization methods for Infinium 450K methylation data using whole-genome bisulfite sequencing data.The Role of DNA Methylation in Cardiovascular Risk and Disease: Methodological Aspects, Study Design, and Data Analysis for Epidemiological Studies.seqlm: an MDL based method for identifying differentially methylated regions in high density methylation array data.An evaluation of processing methods for HumanMethylation450 BeadChip dataComparison of pre-processing methodologies for Illumina 450k methylation array data in familial analyses.TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packagesDNA Methylation Profiles of Blood Cells Are Distinct between Early-Onset Obese and Control Individuals.Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarraysSeminoma and embryonal carcinoma footprints identified by analysis of integrated genome-wide epigenetic and expression profiles of germ cell cancer cell linesComprehensive mapping of the effects of azacitidine on DNA methylation, repressive/permissive histone marks and gene expression in primary cells from patients with MDS and MDS-related disease.DMRforPairs: identifying differentially methylated regions between unique samples using array based methylation profilesUsing high-density DNA methylation arrays to profile copy number alterations.Dynamic imbalance between cancer cell subpopulations induced by transforming growth factor beta (TGF-β) is associated with a DNA methylome switch.Loss of DIP2C in RKO cells stimulates changes in DNA methylation and epithelial-mesenchymal transitionEvaluation of microarray-based DNA methylation measurement using technical replicates: the Atherosclerosis Risk In Communities (ARIC) Study.Immortalization of T-cells is accompanied by gradual changes in CpG methylation resulting in a profile resembling a subset of T-cell leukemias.A comprehensive overview of Infinium HumanMethylation450 data processingAssociation of DNA methylation with age, gender, and smoking in an Arab population.An epigenetic map of age-associated autosomal loci in northern European families at high risk for the metabolic syndromePan-cancer stratification of solid human epithelial tumors and cancer cell lines reveals commonalities and tissue-specific features of the CpG island methylator phenotypeGenome wide DNA methylation profiles provide clues to the origin and pathogenesis of germ cell tumors.Independent genomewide screens identify the tumor suppressor VTRNA2-1 as a human epiallele responsive to periconceptional environmentIntra-Monozygotic Twin Pair Discordance and Longitudinal Variation of Whole-Genome Scale DNA Methylation in Adults.Epigenetic modifications of the glucocorticoid receptor gene are associated with the vulnerability to psychopathology in childhood maltreatment.
P2860
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P2860
An evaluation of analysis pipelines for DNA methylation profiling using the Illumina HumanMethylation450 BeadChip platform.
description
2013 nî lūn-bûn
@nan
2013年の論文
@ja
2013年論文
@yue
2013年論文
@zh-hant
2013年論文
@zh-hk
2013年論文
@zh-mo
2013年論文
@zh-tw
2013年论文
@wuu
2013年论文
@zh
2013年论文
@zh-cn
name
An evaluation of analysis pipe ...... hylation450 BeadChip platform.
@en
type
label
An evaluation of analysis pipe ...... hylation450 BeadChip platform.
@en
prefLabel
An evaluation of analysis pipe ...... hylation450 BeadChip platform.
@en
P2093
P2860
P50
P356
P1433
P1476
An evaluation of analysis pipe ...... hylation450 BeadChip platform.
@en
P2093
Andrew E Teschendorff
Fredrik Fagerström-Billai
Maja Jagodic
Malin Almgren
Sabrina Ruhrmann
Tomas J Ekström
P2860
P304
P356
10.4161/EPI.24008
P577
2013-02-19T00:00:00Z