MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph.
about
Challenges and opportunities in understanding microbial communities with metagenome assembly (accompanied by IPython Notebook tutorial)Beyond 16S rRNA Community Profiling: Intra-Species Diversity in the Gut MicrobiotaMetagenomics of Thermophiles with a Focus on Discovery of Novel ThermozymesMetagenomic Assembly: Overview, Challenges and ApplicationsRecovering complete and draft population genomes from metagenome datasetsA Graph-Centric Approach for Metagenome-Guided Peptide and Protein Identification in MetaproteomicsChloroplast genomes as a tool to resolve red algal phylogenies: a case study in the NemalialesFragmentation and Coverage Variation in Viral Metagenome Assemblies, and Their Effect in Diversity CalculationsConnectivity to the surface determines diversity patterns in subsurface aquifers of the Fennoscandian shieldComputational approaches to natural product discoveryRhodenigma contortum, an obscure new genus and species of Rhodogorgonales (Rhodophyta) from Western Australia.Third generation sequencing technologies applied to diagnostic microbiology: benefits and challenges in applications and data analysis.Evolutionary dynamics of chloroplast genomes in low light: a case study of the endolithic green alga Ostreobium quekettiiUtilization of defined microbial communities enables effective evaluation of meta-genomic assembliesTracking microbial colonization in fecal microbiota transplantation experiments via genome-resolved metagenomics.Vipie: web pipeline for parallel characterization of viral populations from multiple NGS samples.Unexpected Dominance of Elusive Acidobacteria in Early Industrial Soft Coal SlagsMicrofluidic-based mini-metagenomics enables discovery of novel microbial lineages from complex environmental samples.Microbiome of Trichodesmium Colonies from the North Pacific Subtropical GyreAssembling metagenomes, one community at a time.Moleculo Long-Read Sequencing Facilitates Assembly and Genomic Binning from Complex Soil Metagenomes.Detection of low-abundance bacterial strains in metagenomic datasets by eigengenome partitioning.Subtractive assembly for comparative metagenomics, and its application to type 2 diabetes metagenomes.Resolving the Complexity of Human Skin Metagenomes Using Single-Molecule Sequencing.Xander: employing a novel method for efficient gene-targeted metagenomic assembly.Metagenomic Insights into the Uncultured Diversity and Physiology of Microbes in Four Hypersaline Soda Lake Brines.MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communitiesPrediction of peptidoglycan hydrolases- a new class of antibacterial proteins.Comparative metagenomics unveils functions and genome features of microbialite-associated communities along a depth gradient.BASE: a practical de novo assembler for large genomes using long NGS reads.IMP: a pipeline for reproducible reference-independent integrated metagenomic and metatranscriptomic analyses.Accelerating metagenomic read classification on CUDA-enabled GPUs.Comparing and Evaluating Metagenome Assembly Tools from a Microbiologist's Perspective - Not Only Size Matters!Metatranscriptomic Evidence for Direct Interspecies Electron Transfer between Geobacter and Methanothrix Species in Methanogenic Rice Paddy SoilsA Review of Bioinformatics Tools for Bio-Prospecting from Metagenomic Sequence DataFilthy lucre: A metagenomic pilot study of microbes found on circulating currency in New York City.Genomic Reconstruction of an Uncultured Hydrothermal Vent Gammaproteobacterial Methanotroph (Family Methylothermaceae) Indicates Multiple Adaptations to Oxygen Limitation.Differential sensitivity of total and active soil microbial communities to drought and forest management.Epidemiologic and Genotypic Review of Carbapenemase-Producing Organisms in British Columbia, Canada, between 2008 and 2014.Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center.
P2860
Q26798590-D916609C-FE5A-4381-89D7-E8278D229ACDQ28069618-EFCC2218-A7D0-41B3-BF9A-98CA601E78D1Q28070125-C793183D-E1BB-467B-91C3-7B8B1C946D02Q28072693-5EF28252-0948-42C8-A23C-B8B52B0545D5Q28077819-EA531AD0-9762-4EEB-92C8-E7FC471F2218Q28554789-04E29CEB-963A-4F0E-8540-DA90DD4AFCD0Q28597769-04486543-4A82-4FD0-8172-63697CF113B9Q28607221-91A4E1BD-66D2-4D37-9288-FC48FF9E5F13Q28829504-C78D9C91-35EC-4838-8ED0-A2AA7F0AAD06Q28830157-F36BC81D-2939-4779-9D6C-35AE206F27ECQ31106281-8D745F2B-049C-4509-BB29-4F7FD9993828Q31117238-238387C5-31BD-4B62-A820-1ECC3C54598FQ31124148-5C29B1D4-5173-4DF3-8F45-4AF59FE5D60BQ33560568-60668F5D-5FFC-4D5A-A139-362801427411Q33640440-AC0F5804-D9D2-45F2-BE4A-4FDE2D7D49F5Q33681785-1E20A6BF-8836-4894-98A3-29CBEEC25A1CQ33774730-2599B13B-0A26-46A7-A493-ADE6D6AD26B8Q33874521-983335EC-B871-48DA-9C3E-E76D0A4DD2E9Q33875553-22C9306F-2E0E-4ABF-804B-7E2A6EA899DFQ33886672-D7CFF43C-225B-413D-BA69-B1A26D26632BQ34544290-8FE617F7-8927-407C-AC1F-E4482A202F37Q35773591-C4B684DB-AE44-410C-BC53-F66F79BCAF50Q35829936-01B1B573-D149-4092-B4E4-3399C52CECDFQ35918832-50ED1189-5889-4363-B5C3-B5E84B0F2DC1Q35920493-F92A0772-7DC1-4225-AF6C-761FED33CBBAQ35945707-40D31C32-F20F-412D-AB44-DECED4E5F8CAQ36015586-18E82E50-95CA-483E-B215-FB9583FD5D6BQ36031358-198451DC-7989-49D9-A427-E5F06E5DA7ABQ36079271-98D59E2A-B59C-4C93-8EEF-907384F520F7Q36120582-AC717711-194A-4270-B931-F1C40A557E59Q36226914-EA6E00ED-5A78-43D6-8140-CE62E5B3C56BQ36238738-D3F7FC9E-DE16-4BB2-AEC7-233A436B79AAQ36252626-1B9CD9A8-551A-4358-A18C-B00659644788Q36297077-6AC14F02-55F0-4B84-80DD-D12FB6C60186Q36315664-AA8187C7-6653-43C4-A27E-44A263946CF7Q36338586-FCCE6817-BE4D-496B-B202-3103365EE3D4Q36396511-8841685B-48C4-44C6-97BB-16465DA68724Q36405580-C3C92147-32CD-447F-8403-75DB86CCB8D6Q36521327-572DC260-25E3-4884-B139-243C1D4F144AQ37556690-EE2359C7-E425-439E-B16A-2282C9676121
P2860
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph.
description
2015 nî lūn-bûn
@nan
2015年の論文
@ja
2015年学术文章
@wuu
2015年学术文章
@zh-cn
2015年学术文章
@zh-hans
2015年学术文章
@zh-my
2015年学术文章
@zh-sg
2015年學術文章
@yue
2015年學術文章
@zh
2015年學術文章
@zh-hant
name
MEGAHIT: an ultra-fast single- ...... via succinct de Bruijn graph.
@en
type
label
MEGAHIT: an ultra-fast single- ...... via succinct de Bruijn graph.
@en
prefLabel
MEGAHIT: an ultra-fast single- ...... via succinct de Bruijn graph.
@en
P50
P356
P1433
P1476
MEGAHIT: an ultra-fast single- ...... via succinct de Bruijn graph.
@en
P2093
Chi-Man Liu
Dinghua Li
P304
P356
10.1093/BIOINFORMATICS/BTV033
P407
P577
2015-01-20T00:00:00Z