An accurate, residue-level, pair potential of mean force for folding and binding based on the distance-scaled, ideal-gas reference state.
about
Potentials of mean force for protein structure prediction vindicated, formalized and generalizedLow-homology protein threadingQuantitative evaluation of protein-DNA interactions using an optimized knowledge-based potentialA decoy set for the thermostable subdomain from chicken villin headpiece, comparison of different free energy estimators.Structure-based drug design of a new chemical class of small molecules active against influenza A nucleoprotein in vitro and in vivoeVolver: an optimization engine for evolving protein sequences to stabilize the respective structures.Delaunay-based nonlocal interactions are sufficient and accurate in protein fold recognition.Novel knowledge-based mean force potential at the profile levelStructure prediction of helical transmembrane proteins at two length scales.A free-rotating and self-avoiding chain model for deriving statistical potentials based on protein structuresComputational approaches for rational design of proteins with novel functionalitiesAb initio protein structure prediction using chunk-TASSEROPUS-PSP: an orientation-dependent statistical all-atom potential derived from side-chain packing.Discriminative learning for protein conformation sampling.A knowledge-based structure-discriminating function that requires only main-chain atom coordinates.Artefacts and biases affecting the evaluation of scoring functions on decoy sets for protein structure prediction.Explicit orientation dependence in empirical potentials and its significance to side-chain modelingA pairwise residue contact area-based mean force potential for discrimination of native protein structure.A Transferable Coarse Grain Non-bonded Interaction Model For Amino Acids.New statistical potential for quality assessment of protein models and a survey of energy functionsSorting protein decoys by machine-learning-to-rankDiscrimination of Native-like States of Membrane Proteins with Implicit Membrane-based Scoring Functions.Fully differentiable coarse-grained and all-atom knowledge-based potentials for RNA structure evaluation.MQAPRank: improved global protein model quality assessment by learning-to-rank.NCACO-score: an effective main-chain dependent scoring function for structure modelingTemplate-based protein structure modeling using the RaptorX web server.Coarse- and fine-grained models for proteins: evaluation by decoy discrimination.eThread: a highly optimized machine learning-based approach to meta-threading and the modeling of protein tertiary structures.Dynamic protein domains: identification, interdependence, and stabilityScoring predictive models using a reduced representation of proteins: model and energy definition.Recognizing protein-protein interfaces with empirical potentials and reduced amino acid alphabetsM-TASSER: an algorithm for protein quaternary structure predictionProtein model quality assessment prediction by combining fragment comparisons and a consensus C(alpha) contact potentialLimitations of Ab initio predictions of peptide binding to MHC class II moleculesOptimizing structural modeling for a specific protein scaffold: knottins or inhibitor cystine knots.Towards universal structure-based prediction of class II MHC epitopes for diverse allotypes.Detecting remotely related proteins by their interactions and sequence similarityTarget-specific support vector machine scoring in structure-based virtual screening: computational validation, in vitro testing in kinases, and effects on lung cancer cell proliferationFree-energy function for discriminating the native fold of a protein from misfolded decoys.Comparison of the protein-protein interfaces in the p53-DNA crystal structures: towards elucidation of the biological interface.
P2860
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P2860
An accurate, residue-level, pair potential of mean force for folding and binding based on the distance-scaled, ideal-gas reference state.
description
2004 nî lūn-bûn
@nan
2004年の論文
@ja
2004年論文
@yue
2004年論文
@zh-hant
2004年論文
@zh-hk
2004年論文
@zh-mo
2004年論文
@zh-tw
2004年论文
@wuu
2004年论文
@zh
2004年论文
@zh-cn
name
An accurate, residue-level, pa ...... ed, ideal-gas reference state.
@en
type
label
An accurate, residue-level, pa ...... ed, ideal-gas reference state.
@en
prefLabel
An accurate, residue-level, pa ...... ed, ideal-gas reference state.
@en
P2093
P2860
P356
P1433
P1476
An accurate, residue-level, pa ...... led, ideal-gas reference state
@en
P2093
P2860
P304
P356
10.1110/PS.03348304
P50
P577
2004-02-01T00:00:00Z