The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells. - Wikidata - awgldk - TriplyDB

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells.

The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells.

http://www.wikidata.org/entity/Q41861103

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Genetics and immunity in the era of single-cell genomics Design and computational analysis of single-cell RNA-sequencing experiments 4D nucleomes in single cells: what can computational modeling reveal about spatial chromatin conformation?Single-cell sequencing in stem cell biology Single-cell Transcriptome Study as Big Data Single-cell transcriptome sequencing: recent advances and remaining challenges Multipotent pancreas progenitors: Inconclusive but pivotal topic Single-cell technologies to study the immune system Defining cell types and states with single-cell genomics Pancreatic stem cells remain unresolved Advances and applications of single-cell sequencing technologies Single-cell RNA-seq: advances and future challenges Integrated live imaging and molecular profiling of embryoid bodies reveals a synchronized progression of early differentiation.CellTree: an R/bioconductor package to infer the hierarchical structure of cell populations from single-cell RNA-seq data.Single-cell RNA-Seq resolves cellular complexity in sensory organs from the neonatal inner ear.Temporal ordering and registration of images in studies of developmental dynamics A survey of best practices for RNA-seq data analysis Single-Cell Transcriptomics Bioinformatics and Computational Challenges Single-cell gene expression profiling and cell state dynamics: collecting data, correlating data points and connecting the dots Homologous Transcription Factors DUX4 and DUX4c Associate with Cytoplasmic Proteins during Muscle Differentiation In vivo Monitoring of Transcriptional Dynamics After Lower-Limb Muscle Injury Enables Quantitative Classification of Healing Evolution of multiple cell clones over a 29-year period of a CLL patient Differences and similarities between human and chimpanzee neural progenitors during cerebral cortex development Human cerebral organoids recapitulate gene expression programs of fetal neocortex development Nuclear RNA-seq of single neurons reveals molecular signatures of activation Applications for single cell trajectory analysis in inner ear development and regeneration.Quantitative High-Resolution Cellular Map of the Organ of Corti.Vertical flow array chips reliably identify cell types from single-cell mRNA sequencing experiments.Reconstructing blood stem cell regulatory network models from single-cell molecular profiles Bifurcation analysis of single-cell gene expression data reveals epigenetic landscape Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells.3D computational reconstruction of tissues with hollow spherical morphologies using single-cell gene expression data.Spatial reconstruction of single-cell gene expression data.Diffusion maps for high-dimensional single-cell analysis of differentiation data.Reconstructing gene regulatory dynamics from high-dimensional single-cell snapshot data Processing, visualising and reconstructing network models from single-cell data.MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data.OEFinder: a user interface to identify and visualize ordering effects in single-cell RNA-seq data ROMA: Representation and Quantification of Module Activity from Target Expression Data.Wishbone identifies bifurcating developmental trajectories from single-cell data.

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The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells.

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The dynamics and regulators of ...... oral ordering of single cells.

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Cole Trapnell

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Davide Cacchiarelli

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Jonna Grimsby

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Kenneth J Livak

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Michael Morse

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Niall J Lennon

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Prapti Pokharel

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Shuqiang Li

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Tarjei S Mikkelsen

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P2860

GENCODE: producing a reference annotation for ENCODE

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum

miR-31 modulates dystrophin expression: new implications for Duchenne muscular dystrophy therapy

Full-length mRNA-Seq from single-cell levels of RNA and individual circulating tumor cells.

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

Fast gapped-read alignment with Bowtie 2

An expansive human regulatory lexicon encoded in transcription factor footprints

Resolution of cell fate decisions revealed by single-cell gene expression analysis from zygote to blastocyst

An initial blueprint for myogenic differentiation

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