The PREP suite: predictive RNA editors for plant mitochondrial genes, chloroplast genes and user-defined alignments
about
Complete sequence and comparative analysis of the chloroplast genome of coconut palm (Cocos nucifera)Rapid evolution of enormous, multichromosomal genomes in flowering plant mitochondria with exceptionally high mutation ratesComparative chloroplast genomes of photosynthetic orchids: insights into evolution of the Orchidaceae and development of molecular markers for phylogenetic applicationsThe mitochondrial genome of an aquatic plant, Spirodela polyrhizaComplete sequences of organelle genomes from the medicinal plant Rhazya stricta (Apocynaceae) and contrasting patterns of mitochondrial genome evolution across asterids.Horizontal acquisition of multiple mitochondrial genes from a parasitic plant followed by gene conversion with host mitochondrial genes.Insights into the evolution of mitochondrial genome size from complete sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae).Evidence against equimolarity of large repeat arrangements and a predominant master circle structure of the mitochondrial genome from a monkeyflower (Mimulus guttatus) lineage with cryptic CMSThe complete sequence of the mitochondrial genome of Butomus umbellatus--a member of an early branching lineage of monocotyledonsAssembly and analysis of a male sterile rubber tree mitochondrial genome reveals DNA rearrangement events and a novel transcript.Combined analysis of the chloroplast genome and transcriptome of the Antarctic vascular plant Deschampsia antarctica DesvAnalysis of the Complete Chloroplast Genome of a Medicinal Plant, Dianthus superbus var. longicalyncinus, from a Comparative Genomics PerspectiveMiniaturized mitogenome of the parasitic plant Viscum scurruloideum is extremely divergent and dynamic and has lost all nad genesGinkgo and Welwitschia Mitogenomes Reveal Extreme Contrasts in Gymnosperm Mitochondrial Evolution.Localized Retroprocessing as a Model of Intron Loss in the Plant Mitochondrial GenomeComplete Sequence and Analysis of Coconut Palm (Cocos nucifera) Mitochondrial GenomeComparative mitogenomics indicates respiratory competence in parasitic Viscum despite loss of complex I and extreme sequence divergence, and reveals horizontal gene transfer and remarkable variation in genome size.Salt stress affects mRNA editing in soybean chloroplasts.Complete chloroplast genome sequence of common bermudagrass (Cynodon dactylon (L.) Pers.) and comparative analysis within the family PoaceaeAnalysis of the Complete Mitochondrial Genome Sequence of the Diploid Cotton Gossypium raimondii by Comparative Genomics Approaches.Chloroplast Genome Sequence of Pigeonpea (Cajanus cajan (L.) Millspaugh) and Cajanus scarabaeoides (L.) Thouars: Genome Organization and Comparison with Other Legumes.Identification and Analysis of RNA Editing Sites in the Chloroplast Transcripts of Aegilops tauschii L.Assembly and comparative analysis of complete mitochondrial genome sequence of an economic plant Salix suchowensis.The evolution of RNA editing and pentatricopeptide repeat genes.The application of RNA-seq to the comprehensive analysis of plant mitochondrial transcriptomes.Molecular Structure and Phylogenetic Analyses of Complete Chloroplast Genomes of Two Aristolochia Medicinal Species.Dynamic evolution of Geranium mitochondrial genomes through multiple horizontal and intracellular gene transfers.PREPACT 2.0: Predicting C-to-U and U-to-C RNA Editing in Organelle Genome Sequences with Multiple References and Curated RNA Editing Annotation.Deep Transcriptome Sequencing of Two Green Algae, Chara vulgaris and Chlamydomonas reinhardtii, Provides No Evidence of Organellar RNA Editing.Unveiling Chloroplast RNA Editing Events Using Next Generation Small RNA Sequencing Data.Reconstruction of the ancestral plastid genome in Geraniaceae reveals a correlation between genome rearrangements, repeats, and nucleotide substitution rates.Comparative Analysis of Four Calypogeia Species Revealed Unexpected Change in Evolutionarily-Stable Liverwort Mitogenomes.Rapid evolutionary divergence of diploid and allotetraploid Gossypium mitochondrial genomes.The Complete Chloroplast Genome Sequences of the Medicinal Plant Forsythia suspensa (Oleaceae).The Linum usitatissimum L. plastome reveals atypical structural evolution, new editing sites, and the phylogenetic position of Linaceae within Malpighiales.Mitochondrial Retroprocessing Promoted Functional Transfers of rpl5 to the Nucleus in Grasses.Complete mitochondrial genomes from the ferns Ophioglossum californicum and Psilotum nudum are highly repetitive with the largest organellar introns.Unprecedented heterogeneity in the synonymous substitution rate within a plant genome.Nuclear and mitochondrial RNA editing systems have opposite effects on protein diversity.Loss of two introns from the Magnolia tripetala mitochondrial cox2 gene implicates horizontal gene transfer and gene conversion as a novel mechanism of intron loss.
P2860
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P2860
The PREP suite: predictive RNA editors for plant mitochondrial genes, chloroplast genes and user-defined alignments
description
2009 nî lūn-bûn
@nan
2009年の論文
@ja
2009年論文
@yue
2009年論文
@zh-hant
2009年論文
@zh-hk
2009年論文
@zh-mo
2009年論文
@zh-tw
2009年论文
@wuu
2009年论文
@zh
2009年论文
@zh-cn
name
The PREP suite: predictive RNA ...... es and user-defined alignments
@en
type
label
The PREP suite: predictive RNA ...... es and user-defined alignments
@en
prefLabel
The PREP suite: predictive RNA ...... es and user-defined alignments
@en
P2860
P356
P1476
The PREP suite: predictive RNA ...... es and user-defined alignments
@en
P2093
Jeffrey P Mower
P2860
P304
P356
10.1093/NAR/GKP337
P433
Web Server issue
P577
2009-05-11T00:00:00Z