about
A structure-based benchmark for protein-protein binding affinityMolecular docking as a popular tool in drug design, an in silico travelComputational prediction of protein interfaces: A review of data driven methodsSampling and scoring: a marriage made in heavenATTRACT-EM: a new method for the computational assembly of large molecular machines using cryo-EM mapsProtein-protein docking with F(2)Dock 2.0 and GB-rerankCross-link guided molecular modeling with ROSETTALocal Geometry and Evolutionary Conservation of Protein Surfaces Reveal the Multiple Recognition Patches in Protein-Protein InteractionsProgress and challenges in predicting protein interfacesProtein social behavior makes a stronger signal for partner identification than surface geometryInterolog interfaces in protein-protein dockingA Web Resource for Standardized Benchmark Datasets, Metrics, and Rosetta Protocols for Macromolecular Modeling and DesignAlgorithmic approaches to protein-protein interaction site prediction.The value of protein structure classification information-Surveying the scientific literature.Accurate Prediction of Docked Protein Structure Similarity.Homology-Based Prediction of Potential Protein-Protein Interactions between Human Erythrocytes and Plasmodium falciparum.A benchmark testing ground for integrating homology modeling and protein docking.PRISM-EM: template interface-based modelling of multi-protein complexes guided by cryo-electron microscopy density maps.Monte Carlo replica-exchange based ensemble docking of protein conformations.InterPred: A pipeline to identify and model protein-protein interactions.A novel method for protein-protein interaction site prediction using phylogenetic substitution models.A protein-RNA docking benchmark (II): extended set from experimental and homology modeling data.Toward a "structural BLAST": using structural relationships to infer function.Evaluating template-based and template-free protein-protein complex structure prediction.MEGADOCK: an all-to-all protein-protein interaction prediction system using tertiary structure data.Inferring the microscopic surface energy of protein-protein interfaces from mutation data.Cryo-EM Data Are Superior to Contact and Interface Information in Integrative Modeling.Template-based protein-protein docking exploiting pairwise interfacial residue restraints.Extending RosettaDock with water, sugar, and pH for prediction of complex structures and affinities for CAPRI rounds 20-27Scoring docking conformations using predicted protein interfaces.ZDOCK server: interactive docking prediction of protein-protein complexes and symmetric multimers.Prediction of functionally important residues in globular proteins from unusual central distances of amino acids.Prediction of protein-binding areas by small-world residue networks and application to docking.Accelerating protein docking in ZDOCK using an advanced 3D convolution libraryArbitrary protein-protein docking targets biologically relevant interfaces.Small-molecule inhibitors of protein-protein interactions: progressing toward the reality.How to evaluate performance of prediction methods? Measures and their interpretation in variation effect analysis.Protein-protein binding site identification by enumerating the configurationsVariBench: a benchmark database for variations.Protein-protein docking: from interaction to interactome
P2860
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P2860
description
2010 nî lūn-bûn
@nan
2010年の論文
@ja
2010年論文
@yue
2010年論文
@zh-hant
2010年論文
@zh-hk
2010年論文
@zh-mo
2010年論文
@zh-tw
2010年论文
@wuu
2010年论文
@zh
2010年论文
@zh-cn
name
Protein-protein docking benchmark version 4.0.
@en
Protein-protein docking benchmark version 4.0.
@nl
type
label
Protein-protein docking benchmark version 4.0.
@en
Protein-protein docking benchmark version 4.0.
@nl
prefLabel
Protein-protein docking benchmark version 4.0.
@en
Protein-protein docking benchmark version 4.0.
@nl
P2860
P356
P1433
P1476
Protein-protein docking benchmark version 4.0.
@en
P2093
Howook Hwang
Zhiping Weng
P2860
P304
P356
10.1002/PROT.22830
P407
P577
2010-11-01T00:00:00Z