Direct and indirect effects of H-NS and Fis on global gene expression control in Escherichia coli. - Wikidata - awgldk - TriplyDB

Direct and indirect effects of H-NS and Fis on global gene expression control in Escherichia coli.

Direct and indirect effects of H-NS and Fis on global gene expression control in Escherichia coli.

http://www.wikidata.org/entity/Q42113114

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Role of RNA polymerase and transcription in the organization of the bacterial nucleoid Structural basis for recognition of AT-rich DNA by unrelated xenogeneic silencing proteins Indirect DNA Readout by an H-NS Related Protein: Structure of the DNA Complex of the C-Terminal Domain of Ler Control of DNA minor groove width and Fis protein binding by the purine 2-amino group Mapping the regulon of Vibrio cholerae ferric uptake regulator expands its known network of gene regulation.Characterization of the Fur regulon in Pseudomonas syringae pv. tomato DC3000 The T4 phage DNA mimic protein Arn inhibits the DNA binding activity of the bacterial histone-like protein H-NS.ToxR Antagonizes H-NS Regulation of Horizontally Acquired Genes to Drive Host Colonization dPeak: high resolution identification of transcription factor binding sites from PET and SET ChIP-Seq data PortEco: a resource for exploring bacterial biology through high-throughput data and analysis tools.COV2HTML: a visualization and analysis tool of bacterial next generation sequencing (NGS) data for postgenomics life scientists Spacer-length DNA intermediates are associated with Cas1 in cells undergoing primed CRISPR adaptation.Fis Regulates Type III Secretion System by Influencing the Transcription of exsA in Pseudomonas aeruginosa Strain PA14 Genomic mapping of cAMP receptor protein (CRP Mt) in Mycobacterium tuberculosis: relation to transcriptional start sites and the role of CRPMt as a transcription factor.Escherichia coli flagellar genes as target sites for integration and expression of genetic circuits.Nucleoid-associated proteins affect mutation dynamics in E. coli in a growth phase-specific manner Binding of nucleoid-associated protein fis to DNA is regulated by DNA breathing dynamics.E. coli Fis protein insulates the cbpA gene from uncontrolled transcription Computational analyses of transcriptomic data reveal the dynamic organization of the Escherichia coli chromosome under different conditions.Promoters of Escherichia coli versus promoter islands: function and structure comparison.Genome-wide analysis of the salmonella Fis regulon and its regulatory mechanism on pathogenicity islands.Genome-scale analysis of escherichia coli FNR reveals complex features of transcription factor binding.The genome-scale interplay amongst xenogene silencing, stress response and chromosome architecture in Escherichia coli.Integration host factor of Mycobacterium tuberculosis, mIHF, compacts DNA by a bending mechanism.Integrated circuits: how transcriptional silencing and counter-silencing facilitate bacterial evolution Bridged filaments of histone-like nucleoid structuring protein pause RNA polymerase and aid termination in bacteria Force-driven unbinding of proteins HU and Fis from DNA quantified using a thermodynamic Maxwell relation.Identification and validation of novel chromosomal integration and expression loci in Escherichia coli flagellar region 1.The architecture of ArgR-DNA complexes at the genome-scale in Escherichia coli.Site-specific DNA Inversion by Serine Recombinases Flagellar region 3b supports strong expression of integrated DNA and the highest chromosomal integration efficiency of the Escherichia coli flagellar regions.Mapping the CgrA regulon of Rhodospirillum centenum reveals a hierarchal network controlling Gram-negative cyst development.Genome-wide binding analysis of the transcriptional regulator TrmBL1 in Pyrococcus furiosus.H-NS Facilitates Sequence Diversification of Horizontally Transferred DNAs during Their Integration in Host Chromosomes.Genomic analysis of DNA binding and gene regulation by homologous nucleoid-associated proteins IHF and HU in Escherichia coli K12.Organization of DNA in a bacterial nucleoid DNA Sequence Determinants Controlling Affinity, Stability and Shape of DNA Complexes Bound by the Nucleoid Protein Fis.Mapping Topoisomerase IV Binding and Activity Sites on the E. coli Genome.Conserved Units of Co-Expression in Bacterial Genomes: An Evolutionary Insight into Transcriptional Regulation TrmBL2 from Pyrococcus furiosus Interacts Both with Double-Stranded and Single-Stranded DNA.

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Direct and indirect effects of H-NS and Fis on global gene expression control in Escherichia coli.

http://www.wikidata.org/entity/Q42113114

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Aswin S N Seshasayee

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Christina Kahramanoglou

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Jurgen Zimmermann

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Sabine Schmidt

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P2860

Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq

Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding

RNA-Seq: a revolutionary tool for transcriptomics

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution

KEGG for representation and analysis of molecular networks involving diseases and drugs

Expression profiling of the schizont and trophozoite stages of Plasmodium falciparum with a long-oligonucleotide microarray

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Linear models and empirical bayes methods for assessing differential expression in microarray experiments

One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products

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6

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