Steady-state simulations using weighted ensemble path sampling.
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Efficient Atomistic Simulation of Pathways and Calculation of Rate Constants for a Protein-Peptide Binding Process: Application to the MDM2 Protein and an Intrinsically Disordered p53 Peptide.Exploring the conformational transitions of biomolecular systems using a simple two-state anisotropic network modelEquilibrium sampling in biomolecular simulationsAWE-WQ: fast-forwarding molecular dynamics using the accelerated weighted ensemble.Simulations of the alternating access mechanism of the sodium symporter Mhp1.A comparison of weighted ensemble and Markov state model methodologies.Simulating Current-Voltage Relationships for a Narrow Ion Channel Using the Weighted Ensemble Method.WESTPA: an interoperable, highly scalable software package for weighted ensemble simulation and analysisSimulating rare events using a weighted ensemble-based string method.Simple, yet powerful methodologies for conformational sampling of proteins.Path-sampling strategies for simulating rare events in biomolecular systems.Weighted Ensemble Simulation: Review of Methodology, Applications, and Software.Estimating first-passage time distributions from weighted ensemble simulations and non-Markovian analyses.WExplore: hierarchical exploration of high-dimensional spaces using the weighted ensemble algorithm.Sparsity-weighted outlier FLOODing (OFLOOD) method: Efficient rare event sampling method using sparsity of distribution.Beyond microscopic reversibility: Are observable non-equilibrium processes precisely reversible?Simultaneous Computation of Dynamical and Equilibrium Information Using a Weighted Ensemble of Trajectories.Efficient stochastic simulation of chemical kinetics networks using a weighted ensemble of trajectories.Fluctuation Flooding Method (FFM) for accelerating conformational transitions of proteins.An adaptive weighted ensemble procedure for efficient computation of free energies and first passage rates.Heterogeneous path ensembles for conformational transitions in semi-atomistic models of adenylate kinase.Weighted-ensemble Brownian dynamics simulation: sampling of rare events in nonequilibrium systems.Efficiently sampling conformations and pathways using the concurrent adaptive sampling (CAS) algorithm.Steered transition path sampling.
P2860
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P2860
Steady-state simulations using weighted ensemble path sampling.
description
2010 nî lūn-bûn
@nan
2010年の論文
@ja
2010年論文
@yue
2010年論文
@zh-hant
2010年論文
@zh-hk
2010年論文
@zh-mo
2010年論文
@zh-tw
2010年论文
@wuu
2010年论文
@zh
2010年论文
@zh-cn
name
Steady-state simulations using weighted ensemble path sampling.
@en
Steady-state simulations using weighted ensemble path sampling.
@nl
type
label
Steady-state simulations using weighted ensemble path sampling.
@en
Steady-state simulations using weighted ensemble path sampling.
@nl
prefLabel
Steady-state simulations using weighted ensemble path sampling.
@en
Steady-state simulations using weighted ensemble path sampling.
@nl
P2860
P356
P1476
Steady-state simulations using weighted ensemble path sampling.
@en
P2093
Bin W Zhang
Divesh Bhatt
P2860
P304
P356
10.1063/1.3456985
P407
P577
2010-07-01T00:00:00Z