DNA methylation and SETDB1/H3K9me3 regulate predominantly distinct sets of genes, retroelements, and chimeric transcripts in mESCs - Wikidata - awgldk - TriplyDB

DNA methylation and SETDB1/H3K9me3 regulate predominantly distinct sets of genes, retroelements, and chimeric transcripts in mESCs

DNA methylation and SETDB1/H3K9me3 regulate predominantly distinct sets of genes, retroelements, and chimeric transcripts in mESCs

http://www.wikidata.org/entity/Q42826399

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Restricting retrotransposons: a review New players in heterochromatin silencing: histone variant H3.3 and the ATRX/DAXX chaperone The interplay of histone modifications - writers that read Spotting the enemy within: Targeted silencing of foreign DNA in mammalian genomes by the Krüppel-associated box zinc finger protein family DNA methylation pathways and their crosstalk with histone methylation Response of transposable elements to environmental stressors DNA methylation restrains transposons from adopting a chromatin signature permissive for meiotic recombination A Novel Analytical Strategy to Identify Fusion Transcripts between Repetitive Elements and Protein Coding-Exons Using RNA-Seq Retrotransposons shape species-specific embryonic stem cell gene expression Ubiquitination of Lysine 867 of the Human SETDB1 Protein Upregulates Its Histone H3 Lysine 9 (H3K9) Methyltransferase Activity DNA methylation is dispensable for suppression of the agouti viable yellow controlling element in murine embryonic stem cells hnRNP K coordinates transcriptional silencing by SETDB1 in embryonic stem cells The genome-defence gene Tex19.1 suppresses LINE-1 retrotransposons in the placenta and prevents intra-uterine growth retardation in mice MORC1 represses transposable elements in the mouse male germline Transposable elements as genetic regulatory substrates in early development Regulation of Mouse Retroelement MuERV-L/MERVL Expression by REX1 and Epigenetic Control of Stem Cell Potency Distinct roles of KAP1, HP1 and G9a/GLP in silencing of the two-cell-specific retrotransposon MERVL in mouse ES cells VisRseq: R-based visual framework for analysis of sequencing data.Microarray analysis of LTR retrotransposon silencing identifies Hdac1 as a regulator of retrotransposon expression in mouse embryonic stem cells.A team of heterochromatin factors collaborates with small RNA pathways to combat repetitive elements and germline stress.Stella modulates transcriptional and endogenous retrovirus programs during maternal-to-zygotic transition.Regulation of DNA methylation turnover at LTR retrotransposons and imprinted loci by the histone methyltransferase Setdb1 Gene amplification of the histone methyltransferase SETDB1 contributes to human lung tumorigenesis.Reprogramming the methylome: erasing memory and creating diversity.Lsh regulates LTR retrotransposon repression independently of Dnmt3b function.Repression of chimeric transcripts emanating from endogenous retrotransposons by a sequence-specific transcription factor.SMARCAD1 Contributes to the Regulation of Naive Pluripotency by Interacting with Histone Citrullination.Myf5-positive satellite cells contribute to Pax7-dependent long-term maintenance of adult muscle stem cells.piRNA pathway targets active LINE1 elements to establish the repressive H3K9me3 mark in germ cells.Interplay of TRIM28 and DNA methylation in controlling human endogenous retroelements Retrotransposon-induced heterochromatin spreading in the mouse revealed by insertional polymorphisms.Distinct isoform of FABP7 revealed by screening for retroelement-activated genes in diffuse large B-cell lymphoma.Gene properties and chromatin state influence the accumulation of transposable elements in genes Setdb1 is required for germline development and silencing of H3K9me3-marked endogenous retroviruses in primordial germ cells Ectopic DNMT3L triggers assembly of a repressive complex for retroviral silencing in somatic cells.Efficient translation of Dnmt1 requires cytoplasmic polyadenylation and Musashi binding elements A snapshot of histone modifications within transposable elements in Drosophila wild type strains.Citrullination of histone H3 interferes with HP1-mediated transcriptional repression.DNMT3A in haematological malignancies.Histone H3.3 is required for endogenous retroviral element silencing in embryonic stem cells.

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DNA methylation and SETDB1/H3K9me3 regulate predominantly distinct sets of genes, retroelements, and chimeric transcripts in mESCs

http://www.wikidata.org/entity/Q42826399

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2011 nî lūn-bûn

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2011年論文

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2011年論文

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2011年论文

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2011年论文

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2011年论文

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DNA methylation and SETDB1/H3K ...... chimeric transcripts in mESCs

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DNA methylation and SETDB1/H3K ...... chimeric transcripts in mESCs

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DNA methylation and SETDB1/H3K ...... chimeric transcripts in mESCs

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DNA methylation and SETDB1/H3K ...... chimeric transcripts in mESCs

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DNA methylation and SETDB1/H3K ...... chimeric transcripts in mESCs

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DNA methylation and SETDB1/H3K ...... chimeric transcripts in mESCs

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J.STEM.2011.04.004

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DNA methylation and SETDB1/H3K ...... chimeric transcripts in mESCs

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Danny Leung

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Dixie L Mager

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Irina A Maksakova

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Jie Xin Tang

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Martin Hirst

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Misha Bilenky

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Preeti Goyal

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Yoichi Shinkai

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P2860

BioGPS: an extensible and customizable portal for querying and organizing gene annotation resources.

AceView: a comprehensive cDNA-supported gene and transcripts annotation

Mapping and quantifying mammalian transcriptomes by RNA-Seq

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

Establishing, maintaining and modifying DNA methylation patterns in plants and animals

Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

Ensembl's 10th year

Mapping short DNA sequencing reads and calling variants using mapping quality scores

DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA

RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

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676-687

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10.1016/J.STEM.2011.04.004

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6

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8

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Mohammad M Karimi

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51176893

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21624812

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DNA methylation

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3857791

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