The CATH classification revisited--architectures reviewed and new ways to characterize structural divergence in superfamilies. - Wikidata - awgldk - TriplyDB

The CATH classification revisited--architectures reviewed and new ways to characterize structural divergence in superfamilies.

The CATH classification revisited--architectures reviewed and new ways to characterize structural divergence in superfamilies.

http://www.wikidata.org/entity/Q42875582

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Non-homologous isofunctional enzymes: a systematic analysis of alternative solutions in enzyme evolution.How significant is a protein structure similarity with TM-score = 0.5?The Structural Biology Knowledgebase: a portal to protein structures, sequences, functions, and methods BSDB: the biomolecule stretching database PolyQ: a database describing the sequence and domain context of polyglutamine repeats in proteins ASD: a comprehensive database of allosteric proteins and modulators Extending CATH: increasing coverage of the protein structure universe and linking structure with function Further evidence for the likely completeness of the library of solved single domain protein structures Open and closed conformations of two SpoIIAA-like proteins (YP_749275.1 and YP_001095227.1) provide insights into membrane association and ligand binding The crystal structure of the AF2331 protein from Archaeoglobus fulgidus DSM 4304 forms an unusual interdigitated dimer with a new type of alpha + beta fold.Solution Structure and Phylogenetics of Prod1, a Member of the Three-Finger Protein Superfamily Implicated in Salamander Limb Regeneration The structure of the dust mite allergen Der p 7 reveals similarities to innate immune proteins Structural and Functional Study of Yer067w, a New Protein Involved in Yeast Metabolism Control and Drug Resistance Rigid-body Ligand Recognition Drives Cytotoxic T-lymphocyte Antigen 4 (CTLA-4) Receptor Triggering Structural and Biochemical Basis of Yos9 Protein Dimerization and Possible Contribution to Self-association of 3-Hydroxy-3-methylglutaryl-Coenzyme A Reductase Degradation Ubiquitin-Ligase Complex The structure of latherin, a surfactant allergen protein from horse sweat and saliva Novel peptide-mediated interactions derived from high-resolution 3-dimensional structures The Protein Data Bank archive as an open data resource An Algebro-topological description of protein domain structure MeMotif: a database of linear motifs in alpha-helical transmembrane proteins The folding unit of phosphofructokinase-2 as defined by the biophysical properties of a monomeric mutant Protein structure annotation resources.Computational tools for epitope vaccine design and evaluation Nothing about protein structure classification makes sense except in the light of evolution.The SALAMI protein structure search server.Discrete-continuous duality of protein structure space.The value of protein structure classification information-Surveying the scientific literature.Accuracy analysis of multiple structure alignments.ProDaMa: an open source Python library to generate protein structure datasets Structural relationships among proteins with different global topologies and their implications for function annotation strategies PTGL: a database for secondary structure-based protein topologies Generation of a consensus protein domain dictionary.Why not consider a spherical protein? Implications of backbone hydrogen bonding for protein structure and function Exploring the limits of fold discrimination by structural alignment: a large scale benchmark using decoys of known fold.Representing and comparing protein folds and fold families using three-dimensional shape-density representations.Fast protein structure alignment using Gaussian overlap scoring of backbone peptide fragment similarity.Low-density lipoprotein receptor gene familial hypercholesterolemia variant database: update and pathological assessment.CREST--a large and diverse superfamily of putative transmembrane hydrolases.Innate immunity. A Spaetzle-like role for nerve growth factor β in vertebrate immunity to Staphylococcus aureus.Gene3D: merging structure and function for a Thousand genomes.

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P2860

The CATH classification revisited--architectures reviewed and new ways to characterize structural divergence in superfamilies.

http://www.wikidata.org/entity/Q42875582

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2008 nî lūn-bûn

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2008年の論文

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2008年論文

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2008年论文

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name

The CATH classification revisi ...... l divergence in superfamilies.

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The CATH classification revisi ...... l divergence in superfamilies.

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The CATH classification revisi ...... l divergence in superfamilies.

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The CATH classification revisi ...... l divergence in superfamilies.

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The CATH classification revisi ...... l divergence in superfamilies.

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The CATH classification revisi ...... l divergence in superfamilies.

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Tony Lewis

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P2860

Crystal structure and mechanism of human L-arginine:glycine amidinotransferase: a mitochondrial enzyme involved in creatine biosynthesis

Crystal structure of RNA 3'-terminal phosphate cyclase, a ubiquitous enzyme with unusual topology

Atomic Resolution Structures of Rieske Iron-Sulfur Protein: Role of Hydrogen Bonds in Tuning the Redox Potential of Iron-Sulfur Clusters

Structural basis of light harvesting by carotenoids: peridinin-chlorophyll-protein from Amphidinium carterae

Crystal structure of human BPI and two bound phospholipids at 2.4 angstrom resolution

CATH--a hierarchic classification of protein domain structures

Protein structure comparison: implications for the nature of 'fold space', and structure and function prediction.

CATHEDRAL: a fast and effective algorithm to predict folds and domain boundaries from multidomain protein structures.

Gene3D: comprehensive structural and functional annotation of genomes

Beta propellers: structural rigidity and functional diversity.

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10.1093/NAR/GKN877

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Database issue

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37

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Christine Orengo

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