Assessment of bias associated with incomplete extraction of microbial DNA from soil. - Wikidata - awgldk - TriplyDB

Assessment of bias associated with incomplete extraction of microbial DNA from soil.

Assessment of bias associated with incomplete extraction of microbial DNA from soil.

http://www.wikidata.org/entity/Q43072037

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The truth about metagenomics: quantifying and counteracting bias in 16S rRNA studies Considerations For Optimizing Microbiome Analysis Using a Marker Gene Ancient and modern environmental DNA Standardisation of methods in soil microbiology: progress and challenges Validation and application of a PCR primer set to quantify fungal communities in the soil environment by real-time quantitative PCR.Metagenomic analysis of a southern maritime antarctic soil The airway microbiota in cystic fibrosis: a complex fungal and bacterial community--implications for therapeutic management Sequencing our way towards understanding global eukaryotic biodiversity Long-Term Warming Alters Carbohydrate Degradation Potential in Temperate Forest Soils Soil Fungal:Bacterial Ratios Are Linked to Altered Carbon Cycling High abundance of ammonia-oxidizing Archaea in coastal waters, determined using a modified DNA extraction method Technicalities and Glitches of Terminal Restriction Fragment Length Polymorphism (T-RFLP).Impacts of inter- and intralaboratory variations on the reproducibility of microbial community analyses Size Does Matter: Application-driven Approaches for Soil Metagenomics.Next-generation sequencing in the analysis of human microbiota: essential considerations for clinical application.Multiple DNA extractions coupled with stable-isotope probing of anthracene-degrading bacteria in contaminated soil Soil-specific limitations for access and analysis of soil microbial communities by metagenomics.Influence of DNA extraction and PCR amplification on studies of soil fungal communities based on amplicon sequencing.Microbiomes of ant castes implicate new microbial roles in the fungus-growing ant Trachymyrmex septentrionalis.Peatland microbial communities and decomposition processes in the james bay lowlands, Canada.Taxa-area relationship and neutral dynamics influence the diversity of fungal communities on senesced tree leaves.The under-recognized dominance of Verrucomicrobia in soil bacterial communities.Development and validation of a real-time PCR assay for detection and quantification of Tuber magnatum in soil.PCR biases distort bacterial and archaeal community structure in pyrosequencing datasets.Effects of remediation on the bacterial community of an acid mine drainage impacted stream.Analysis of black fungal biofilms occurring at domestic water taps. I: compositional analysis using Tag-Encoded FLX Amplicon Pyrosequencing.Functional assays and metagenomic analyses reveals differences between the microbial communities inhabiting the soil horizons of a Norway spruce plantation.Next-generation sequencing to inventory taxonomic diversity in eukaryotic communities: a test for freshwater diatoms.DNA extraction protocols cause differences in 16S rRNA amplicon sequencing efficiency but not in community profile composition or structure.Changes in diversity, abundance, and structure of soil bacterial communities in Brazilian Savanna under different land use systems.Spatio-temporal dynamic of Tuber magnatum mycelium in natural truffle grounds.Ectomycorrhizal-dominated boreal and tropical forests have distinct fungal communities, but analogous spatial patterns across soil horizons.Investigating bacterial populations in styrene-degrading biofilters by 16S rDNA tag pyrosequencing Impacts of labile organic carbon concentration on organic and inorganic nitrogen utilization by a stream biofilm bacterial community Amplicon pyrosequencing reveals the soil microbial diversity associated with invasive Japanese barberry (Berberis thunbergii DC.).Stage 0 sporulation gene A as a molecular marker to study diversity of endospore-forming Firmicutes.Meta-barcoded evaluation of the ISO standard 11063 DNA extraction procedure to characterize soil bacterial and fungal community diversity and composition.Potato-associated arbuscular mycorrhizal fungal communities in the Peruvian Andes.Water stratification affects the microeukaryotic community in a subtropical deep reservoir.Evaluating variation in human gut microbiota profiles due to DNA extraction method and inter-subject differences.

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P2860

Assessment of bias associated with incomplete extraction of microbial DNA from soil.

http://www.wikidata.org/entity/Q43072037

description

2009 nî lūn-bûn

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2009年の論文

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2009年学术文章

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2009年学术文章

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2009年学术文章

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2009年学术文章

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2009年学术文章

@zh-my

2009年学术文章

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2009年學術文章

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2009年學術文章

@zh-hant

name

Assessment of bias associated with incomplete extraction of microbial DNA from soil.

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Assessment of bias associated with incomplete extraction of microbial DNA from soil.

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type

label

Assessment of bias associated with incomplete extraction of microbial DNA from soil.

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Assessment of bias associated with incomplete extraction of microbial DNA from soil.

@nl

prefLabel

Assessment of bias associated with incomplete extraction of microbial DNA from soil.

@en

Assessment of bias associated with incomplete extraction of microbial DNA from soil.

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Applied and Environmental Microbiology

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Assessment of bias associated with incomplete extraction of microbial DNA from soil

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Christopher B Blackwood

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Larry M Feinstein

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P2860

Pyrosequencing enumerates and contrasts soil microbial diversity

Phylogenetic identification and in situ detection of individual microbial cells without cultivation

Fungal-specific PCR primers developed for analysis of the ITS region of environmental DNA extracts

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

Terminal restriction fragment length polymorphism data analysis for quantitative comparison of microbial communities.

The use of coded PCR primers enables high-throughput sequencing of multiple homolog amplification products by 454 parallel sequencing.

Microbial diversity and function in soil: from genes to ecosystems.

Fungal community analysis by large-scale sequencing of environmental samples

Phylum- and class-specific PCR primers for general microbial community analysis.

Identifying the dominant soil bacterial taxa in libraries of 16S rRNA and 16S rRNA genes.

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5428-5433

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scholarly article

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10.1128/AEM.00120-09

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