SuperLooper--a prediction server for the modeling of loops in globular and membrane proteins. - Wikidata - awgldk - TriplyDB

SuperLooper--a prediction server for the modeling of loops in globular and membrane proteins.

SuperLooper--a prediction server for the modeling of loops in globular and membrane proteins.

http://www.wikidata.org/entity/Q43103622

about

Functional diversity and structural disorder in the human ubiquitination pathway In silico proteomic characterization of human epidermal growth factor receptor 2 (HER-2) for the mapping of high affinity antigenic determinants against breast cancer Virtual and biophysical screening targeting the γ-tubulin complex--a new target for the inhibition of microtubule nucleation Identification of STAT1 and STAT3 specific inhibitors using comparative virtual screening and docking validation ArchDB 2014: structural classification of loops in proteins BCSearch: fast structural fragment mining over large collections of protein structures.The Framework of Computational Protein Design.Antibody H3 Structure Prediction.LoopWeaver: loop modeling by the weighted scaling of verified proteins.How long is a piece of loop?Modeling of loops in proteins: a multi-method approach.Predicting transmembrane helix packing arrangements using residue contacts and a force-directed algorithm GPCR-SSFE: a comprehensive database of G-protein-coupled receptor template predictions and homology models.The antibodies against the computationally designed mimic of the glycoprotein hormone receptor transmembrane domain provide insights into receptor activation and suppress the constitutively activated receptor mutants.Mapping discontinuous protein-binding sites via structure-based peptide libraries: combining in silico and in vitro approaches.Towards improved quality of GPCR models by usage of multiple templates and profile-profile comparison Novel VEGFR-2 kinase inhibitors identified by the back-to-front approach.The FALC-Loop web server for protein loop modeling.Fast protein loop sampling and structure prediction using distance-guided sequential chain-growth Monte Carlo method.Role of Structural Dynamics at the Receptor G Protein Interface for Signal Transduction Interpretation of Seemingly Contradictory Data: Low NMR S2 Order Parameters Observed in Helices and High NMR S2 Order Parameters in Disordered Loops of the Protein hGH at Low pH.Construction and validation of a homology model of the human voltage-gated proton channel hHV1 patGPCR: a multitemplate approach for improving 3D structure prediction of transmembrane helices of G-protein-coupled receptors.Structural and kinetic modeling of an activating helix switch in the rhodopsin-transducin interface Cloud-based simulations on Google Exacycle reveal ligand modulation of GPCR activation pathways.What's in a loop?Molecular Modeling of Transporters: From Low Resolution Cryo-Electron Microscopy Map to Conformational Exploration. The Example of TSPO.GPCR-SSFE 2.0-a fragment-based molecular modeling web tool for Class A G-protein coupled receptors.Sphinx: merging knowledge-based and ab initio approaches to improve protein loop prediction.Progress in super long loop prediction.Expanding the horizons of G protein-coupled receptor structure-based ligand discovery and optimization using homology models.Fragment-based modeling of membrane protein loops: successes, failures, and prospects for the future.SL2: an interactive webtool for modeling of missing segments in proteins Lipids and ions traverse the membrane by the same physical pathway in the nhTMEM16 scramblase.A fragment based method for modeling of protein segments into cryo-EM density maps.Loop prediction for a GPCR homology model: algorithms and results.Protein loop selection using orientation-dependent force fields derived by parameter optimization.Large loop conformation sampling using the activation relaxation technique, ART-nouveau method.Molecular Modelling of G Protein-Coupled Receptors Through the Web.FragFit: a web-application for interactive modeling of protein segments into cryo-EM density maps.

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SuperLooper--a prediction server for the modeling of loops in globular and membrane proteins.

http://www.wikidata.org/entity/Q43103622

description

2009 nî lūn-bûn

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2009年の論文

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2009年学术文章

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2009年学术文章

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2009年学术文章

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2009年学术文章

@zh-hans

2009年学术文章

@zh-my

2009年学术文章

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2009年學術文章

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2009年學術文章

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name

SuperLooper--a prediction serv ...... lobular and membrane proteins.

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SuperLooper--a prediction serv ...... lobular and membrane proteins.

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type

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SuperLooper--a prediction serv ...... lobular and membrane proteins.

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SuperLooper--a prediction serv ...... lobular and membrane proteins.

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prefLabel

SuperLooper--a prediction serv ...... lobular and membrane proteins.

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SuperLooper--a prediction serv ...... lobular and membrane proteins.

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Nucleic Acids Research

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SuperLooper--a prediction serv ...... lobular and membrane proteins.

@en

P2093

Bjoern Gruening

http://www.w3.org/2001/XMLSchema#string

Elke Michalsky

http://www.w3.org/2001/XMLSchema#string

Jochen Ismer

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Peter W Hildebrand

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Raphael A Bauer

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P2860

The Protein Data Bank

PDB_TM: selection and membrane localization of transmembrane proteins in the protein data bank

Crystal structure of opsin in its G-protein-interacting conformation

ModLoop: automated modeling of loops in protein structures

A hierarchical approach to all-atom protein loop prediction

TMDET: web server for detecting transmembrane regions of proteins by using their 3D coordinates.

Prediction of the conformation and geometry of loops in globular proteins: testing ArchDB, a structural classification of loops.

Protein loop structure prediction with flexible stem geometries.

ArchPRED: a template based loop structure prediction server.

Modeling protein loops with knowledge-based prediction of sequence-structure alignment.

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W571-4

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scholarly article

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10.1093/NAR/GKP338

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Web Server issue

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37

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Björn A Grüning

Robert Preissner

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2009-05-08T00:00:00Z

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24415554

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19429894

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2703960

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