Ortho-proteogenomics: multiple proteomes investigation through orthology and a new MS-based protocol. - Wikidata - awgldk - TriplyDB

Ortho-proteogenomics: multiple proteomes investigation through orthology and a new MS-based protocol.

Ortho-proteogenomics: multiple proteomes investigation through orthology and a new MS-based protocol.

http://www.wikidata.org/entity/Q43214369

about

Alliance of proteomics and genomics to unravel the specificities of Sahara bacterium Deinococcus deserti Systems Biology Approaches to Understand Natural Products Biosynthesis Proteomic tools to decipher microbial community structure and functioning The Pacific Northwest National Laboratory library of bacterial and archaeal proteomic biodiversity Molybdoenzyme that catalyzes the anaerobic hydroxylation of a tertiary carbon atom in the side chain of cholesterol Re-annotation of the Saccharopolyspora erythraea genome using a systems biology approach N-Terminal-oriented proteogenomics of the marine bacterium roseobacter denitrificans Och114 using N-Succinimidyloxycarbonylmethyl)tris(2,4,6-trimethoxyphenyl)phosphonium bromide (TMPP) labeling and diagonal chromatography.A proteogenomic update to Yersinia: enhancing genome annotation.A method for N-terminal de novo sequencing of Nα-blocked proteins by mass spectrometry.N-terminal Proteomics Assisted Profiling of the Unexplored Translation Initiation Landscape in Arabidopsis thaliana Using chemical derivatization and mass spectrometric analysis to characterize the post-translationally modified Staphylococcus aureus surface protein G A proteogenomic analysis of Shigella flexneri using 2D LC-MALDI TOF/TOF Proteogenomic analysis of bacteria and archaea: a 46 organism case study High-throughput proteogenomics of Ruegeria pomeroyi: seeding a better genomic annotation for the whole marine Roseobacter clade.Proteogenomics to discover the full coding content of genomes: a computational perspective.Comparative omics-driven genome annotation refinement: application across Yersiniae Microbiology and proteomics, getting the best of both worlds!Proteogenomics of Gammarus fossarum to document the reproductive system of amphipods.Mining proteomic data to expose protein modifications in Methanosarcina mazei strain Gö1.Mycobacterial tlyA gene product is localized to the cell-wall without signal sequence.Toward a standard in structural genome annotation for prokaryotes.Evolutionary interpretations of mycobacteriophage biodiversity and host-range through the analysis of codon usage bias.Dual use of peptide mass spectra: Protein atlas and genome annotation.Proteogenomic Analysis of Mycobacterium smegmatis Using High Resolution Mass Spectrometry.Proteogenomic analysis of Bradyrhizobium japonicum USDA110 using GenoSuite, an automated multi-algorithmic pipeline.Tissue-specific Proteogenomic Analysis of Plutella xylostella Larval Midgut Using a Multialgorithm Pipeline.Identification and characterization of the tungsten-containing class of benzoyl-coenzyme A reductases.An automated proteogenomic method uses mass spectrometry to reveal novel genes in Zea mays.Peptides Labeled with Pyridinium Salts for Sensitive Detection and Sequencing by Electrospray Tandem Mass Spectrometry.Proteogenomics and systems biology: quest for the ultimate missing parts.Mass spectrometry at the interface of proteomics and genomics.Selected reaction monitoring applied to proteomics.Proteogenomics for environmental microbiology.Proteogenomics in microbiology: taking the right turn at the junction of genomics and proteomics.The application of terminomics for the identification of protein start sites and proteoforms in bacteria.Clinical implications of recent advances in proteogenomics.Proteogenomics of rare taxonomic phyla: A prospective treasure trove of protein coding genes.Pan-proteomics, a concept for unifying quantitative proteome measurements when comparing closely-related bacterial strains.Methods, Tools and Current Perspectives in Proteogenomics.Doublet N-Terminal Oriented Proteomics for N-Terminomics and Proteolytic Processing Identification.

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P2860

Ortho-proteogenomics: multiple proteomes investigation through orthology and a new MS-based protocol.

http://www.wikidata.org/entity/Q43214369

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Ortho-proteogenomics: multiple ...... y and a new MS-based protocol.

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Alain Van Dorsselaer

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Caroline Deshayes

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Christine Schaeffer

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Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides

The complete genome and proteome of Mycoplasma mobile

Operons in Escherichia coli: genomic analyses and predictions

Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

Extent of N-terminal methionine excision from Escherichia coli proteins is governed by the side-chain length of the penultimate amino acid

Comparative proteogenomics: combining mass spectrometry and comparative genomics to analyze multiple genomes

Whole proteome analysis of post-translational modifications: applications of mass-spectrometry for proteogenomic annotation

A universally applicable method of operon map prediction on minimally annotated genomes using conserved genomic context.

Mass spectrometry allows direct identification of proteins in large genomes

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10.1101/GR.081901.108

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1

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