Characterization of metabolism in the Fe(III)-reducing organism Geobacter sulfurreducens by constraint-based modeling. - Wikidata - awgldk - TriplyDB

Characterization of metabolism in the Fe(III)-reducing organism Geobacter sulfurreducens by constraint-based modeling.

Characterization of metabolism in the Fe(III)-reducing organism Geobacter sulfurreducens by constraint-based modeling.

http://www.wikidata.org/entity/Q43234569

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OptForce: an optimization procedure for identifying all genetic manipulations leading to targeted overproductions Comparative genomic analysis of Geobacter sulfurreducens KN400, a strain with enhanced capacity for extracellular electron transfer and electricity production Genomic determinants of organohalide-respiration in Geobacter lovleyi, an unusual member of the Geobacteraceae The genome of Geobacter bemidjiensis, exemplar for the subsurface clade of Geobacter species that predominate in Fe(III)-reducing subsurface environments Evolution of electron transfer out of the cell: comparative genomics of six Geobacter genomes Genome-wide analysis of the RpoN regulon in Geobacter sulfurreducens Constraint-based analysis of metabolic capacity of Salmonella typhimurium during host-pathogen interaction Metabolic response of Geobacter sulfurreducens towards electron donor/acceptor variation Revealing the structural origin of the redox-Bohr effect: the first solution structure of a cytochrome from Geobacter sulfurreducens Computational and experimental analysis of redundancy in the central metabolism of Geobacter sulfurreducens Constraint-based model of Shewanella oneidensis MR-1 metabolism: a tool for data analysis and hypothesis generation Constraint-based modeling of carbon fixation and the energetics of electron transfer in Geobacter metallireducens Structure, function, and mechanism of the nickel metalloenzymes, CO dehydrogenase, and acetyl-CoA synthase Computational identification of obligatorily autocatalytic replicators embedded in metabolic networks Applications of genome-scale metabolic reconstructions.Construction and completion of flux balance models from pathway databases Genome-wide gene regulation of biosynthesis and energy generation by a novel transcriptional repressor in Geobacter species.Evaluation of a genome-scale in silico metabolic model for Geobacter metallireducens by using proteomic data from a field biostimulation experiment.Subsurface clade of Geobacteraceae that predominates in a diversity of Fe(III)-reducing subsurface environments.Genome-scale models of bacterial metabolism: reconstruction and applications.Genome-scale constraint-based modeling of Geobacter metallireducens Evolution from a respiratory ancestor to fill syntrophic and fermentative niches: comparative fenomics of six Geobacteraceae species.Genome-scale comparison and constraint-based metabolic reconstruction of the facultative anaerobic Fe(III)-reducer Rhodoferax ferrireducens.Characterization of proton production and consumption associated with microbial metabolism.Characterizing the metabolism of Dehalococcoides with a constraint-based model.Influence of external resistance on electrogenesis, methanogenesis, and anode prokaryotic communities in microbial fuel cells Constraint-based modeling analysis of the metabolism of two Pelobacter species.Thermodynamic characterization of a triheme cytochrome family from Geobacter sulfurreducens reveals mechanistic and functional diversity.Functional metabolic map of Faecalibacterium prausnitzii, a beneficial human gut microbe.OptCom: a multi-level optimization framework for the metabolic modeling and analysis of microbial communities Anaerobic oxidation of benzene by the hyperthermophilic archaeon Ferroglobus placidus The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli.Analysis of enhanced current-generating mechanism of Geobacter sulfurreducens strain via model-driven metabolism simulation.Accomplishments in genome-scale in silico modeling for industrial and medical biotechnology Using the reconstructed genome-scale human metabolic network to study physiology and pathology Survey of Microbial Diversity in Flood Areas during Thailand 2011 Flood Crisis Using High-Throughput Tagged Amplicon Pyrosequencing.Metabolic modeling of a mutualistic microbial community.Flux analysis of central metabolic pathways in Geobacter metallireducens during reduction of soluble Fe(III)-nitrilotriacetic acid Fine Tuning of Redox Networks on Multiheme Cytochromes from Geobacter sulfurreducens Drives Physiological Electron/Proton Energy Transduction Electrochemical techniques reveal that total ammonium stress increases electron flow to anode respiration in mixed-species bacterial anode biofilms.

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P2860

Characterization of metabolism in the Fe(III)-reducing organism Geobacter sulfurreducens by constraint-based modeling.

http://www.wikidata.org/entity/Q43234569

description

2006 nî lūn-bûn

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Characterization of metabolism in the Fe

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Characterization of metabolism ...... by constraint-based modeling.

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Characterization of metabolism in the Fe

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Characterization of metabolism ...... by constraint-based modeling.

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Characterization of metabolism in the Fe

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Characterization of metabolism ...... by constraint-based modeling.

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AEM.72.2.1558-1568.2006

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Applied and Environmental Microbiology

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Characterization of metabolism ...... by constraint-based modeling.

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Butler JE

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Coppi MV

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Esteve-Nuñez A

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Lovley DR

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Mahadevan R

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Palsson BO

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Schilling CH

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An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)

Metabolic flux balance analysis and the in silico analysis of Escherichia coli K-12 gene deletions

Genome of Geobacter sulfurreducens: Metal Reduction in Subsurface Environments

Mechanisms for accessing insoluble Fe(III) oxide during dissimilatory Fe(III) reduction by Geothrix fermentans.

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

Transport of C(4)-dicarboxylates in Wolinella succinogenes

Electricity production by Geobacter sulfurreducens attached to electrodes

Stimulating the in situ activity of Geobacter species to remove uranium from the groundwater of a uranium-contaminated aquifer

Geobacter sulfurreducens sp. nov., a hydrogen- and acetate-oxidizing dissimilatory metal-reducing microorganism

The Escherichia coli MG1655 in silico metabolic genotype: its definition, characteristics, and capabilities

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