One-dimensional reaction coordinates for diffusive activated rate processes in many dimensions.
about
Diffusion along the splitting/commitment probability reaction coordinateFolding and unfolding of a photoswitchable peptide from picoseconds to microseconds.Estimating diffusivity along a reaction coordinate in the high friction limit: Insights on pulse times in laser-induced nucleation.Gaussian-mixture umbrella sampling.Catching a protein in the act.Reaction coordinates and rates from transition paths.Recent developments in methods for identifying reaction coordinates.Recovering kinetics from a simplified protein folding model using replica exchange simulations: a kinetic network and effective stochastic dynamics.Multidimensional reaction rate theory with anisotropic diffusion.Communication: Does force spectroscopy of biomolecules probe their intrinsic dynamic properties?Nonequilibrium candidate Monte Carlo is an efficient tool for equilibrium simulation.The yeast nuclear pore complex and transport through itCharacterization of a dynamic string method for the construction of transition pathways in molecular reactionsDiffusion models of protein foldingRate theories for biologistsThe cardiac Ca2+-sensitive regulatory switch, a system in dynamic equilibriumModelling flow-induced crystallisation in polymers.Transition path time distribution and the transition path free energy barrier.Minimal folding pathways for coarse-grained biopolymer fragments.Bayesian comparison of Markov models of molecular dynamics with detailed balance constraint.Reducing the cost of evaluating the committor by a fitting procedure.Protein folding: complex potential for the driving force in a two-dimensional space of collective variables.On the coupling between slow diffusion transport and barrier crossing in nucleation.Reaction coordinates, one-dimensional Smoluchowski equations, and a test for dynamical self-consistency.Competing nucleation pathways in a mixture of oppositely charged colloids: out-of-equilibrium nucleation revisited.Interplay of non-Markov and internal friction effects in the barrier crossing kinetics of biopolymers: insights from an analytically solvable model.Effective stochastic dynamics on a protein folding energy landscape.Exact dynamical coarse-graining without time-scale separation.Automatic discovery of metastable states for the construction of Markov models of macromolecular conformational dynamics.Nucleation pathway of core-shell composite nucleus in size and composition space and in component space.Transition path time distributions.Transition path times reveal memory effects and anomalous diffusion in the dynamics of protein folding.Interplay of fast and slow dynamics in rare transition pathways: The disk-to-slab transition in the 2d Ising model.Critical length of a one-dimensional nucleus.Memory-induced acceleration and slowdown of barrier crossing.A harmonic transition state approximation for the duration of reactive events in complex molecular rearrangements.Identification of simple reaction coordinates from complex dynamics.Predicting reaction coordinates in energy landscapes with diffusion anisotropy.Properties of low-dimensional collective variables in the molecular dynamics of biopolymers.Steady-state nucleation rate and flux of composite nucleus at saddle point.
P2860
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P2860
One-dimensional reaction coordinates for diffusive activated rate processes in many dimensions.
description
2005 nî lūn-bûn
@nan
2005年の論文
@ja
2005年学术文章
@wuu
2005年学术文章
@zh
2005年学术文章
@zh-cn
2005年学术文章
@zh-hans
2005年学术文章
@zh-my
2005年学术文章
@zh-sg
2005年學術文章
@yue
2005年學術文章
@zh-hant
name
One-dimensional reaction coord ...... processes in many dimensions.
@en
One-dimensional reaction coord ...... processes in many dimensions.
@nl
type
label
One-dimensional reaction coord ...... processes in many dimensions.
@en
One-dimensional reaction coord ...... processes in many dimensions.
@nl
prefLabel
One-dimensional reaction coord ...... processes in many dimensions.
@en
One-dimensional reaction coord ...... processes in many dimensions.
@nl
P2860
P356
P1476
One-dimensional reaction coord ...... processes in many dimensions.
@en
P2093
Alexander Berezhkovskii
Attila Szabo
P2860
P356
10.1063/1.1818091
P407
P577
2005-01-01T00:00:00Z