A new algorithm for the evaluation of shotgun peptide sequencing in proteomics: support vector machine classification of peptide MS/MS spectra and SEQUEST scores.
about
From bytes to bedside: data integration and computational biology for translational cancer researchA novel human NatA Nalpha-terminal acetyltransferase complex: hNaa16p-hNaa10p (hNat2-hArd1)Identification and characterization of the human ARD1-NATH protein acetyltransferase complexThe chaperone-like protein HYPK acts together with NatA in cotranslational N-terminal acetylation and prevention of Huntingtin aggregationTransformation and other factors of the peptide mass spectrometry pairwise peak-list comparison process.Comparison of Mascot and X!Tandem performance for low and high accuracy mass spectrometry and the development of an adjusted Mascot threshold.The application of new software tools to quantitative protein profiling via isotope-coded affinity tag (ICAT) and tandem mass spectrometry: II. Evaluation of tandem mass spectrometry methodologies for large-scale protein analysis, and the applicatioOvarian cancer identification based on dimensionality reduction for high-throughput mass spectrometry data.Comprehensive analysis of a multidimensional liquid chromatography mass spectrometry dataset acquired on a quadrupole selecting, quadrupole collision cell, time-of-flight mass spectrometer: I. How much of the data is theoretically interpretable by sBioinformatics in mass spectrometry data analysis for proteomics studies.Quality classification of tandem mass spectrometry data.Comprehensive analysis of a multidimensional liquid chromatography mass spectrometry dataset acquired on a quadrupole selecting, quadrupole collision cell, time-of-flight mass spectrometer: II. New developments in Protein Prospector allow for reliabImproved classification of mass spectrometry database search results using newer machine learning approaches.A nonparametric model for quality control of database search results in shotgun proteomics.K-OPLS package: kernel-based orthogonal projections to latent structures for prediction and interpretation in feature space.Quality assessment of tandem mass spectra using support vector machine (SVM)Improvements to the percolator algorithm for Peptide identification from shotgun proteomics data sets.Integrated platform for manual and high-throughput statistical validation of tandem mass spectra.DtaRefinery, a software tool for elimination of systematic errors from parent ion mass measurements in tandem mass spectra data sets.Reducing the haystack to find the needle: improved protein identification after fast elimination of non-interpretable peptide MS/MS spectra and noise reductionAn improved machine learning protocol for the identification of correct Sequest search resultsDiscussion on common data analysis strategies used in MS-based proteomics.Computational and statistical analysis of protein mass spectrometry data.A survey of computational methods and error rate estimation procedures for peptide and protein identification in shotgun proteomics.The enzymatic activity of 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase is enhanced by NPM-ALK: new insights in ALK-mediated pathogenesis and the treatment of ALCL.Assigning spectrum-specific P-values to protein identifications by mass spectrometryExtensive and varied modifications in histone H2B of wild-type and histone deacetylase 1 mutant Neurospora crassaPeptide identification based on fuzzy classification and clustering.Protein identification by mass spectrometry: issues to be considered.Advances and challenges in liquid chromatography-mass spectrometry-based proteomics profiling for clinical applicationsPlasmodium vivax trophozoite-stage proteomesQuantitative LC-MS/MS Analysis of Proteins Involved in Metastasis of Breast Cancer.Direct maximization of protein identifications from tandem mass spectraAn adaptive classification model for peptide identificationIdentification and bioactivity evaluation of a novel bradykinin inhibitory peptide from the skin secretion of Chinese large odorous frog, Odorrana livida.Proteomics strategies for protein identification.Using SEQUEST with theoretically complete sequence databasesVerification of single-peptide protein identifications by the application of complementary database search algorithms.Genome annotating proteomics pipelines: available tools.A novel algorithm for validating peptide identification from a shotgun proteomics search engine
P2860
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P2860
A new algorithm for the evaluation of shotgun peptide sequencing in proteomics: support vector machine classification of peptide MS/MS spectra and SEQUEST scores.
description
2003 nî lūn-bûn
@nan
2003年の論文
@ja
2003年学术文章
@wuu
2003年学术文章
@zh-cn
2003年学术文章
@zh-hans
2003年学术文章
@zh-my
2003年学术文章
@zh-sg
2003年學術文章
@yue
2003年學術文章
@zh
2003年學術文章
@zh-hant
name
A new algorithm for the evalua ...... MS spectra and SEQUEST scores.
@en
A new algorithm for the evalua ...... MS spectra and SEQUEST scores.
@nl
type
label
A new algorithm for the evalua ...... MS spectra and SEQUEST scores.
@en
A new algorithm for the evalua ...... MS spectra and SEQUEST scores.
@nl
prefLabel
A new algorithm for the evalua ...... MS spectra and SEQUEST scores.
@en
A new algorithm for the evalua ...... MS spectra and SEQUEST scores.
@nl
P2093
P356
P1476
A new algorithm for the evalua ...... MS spectra and SEQUEST scores.
@en
P2093
D C Anderson
Donald G Payan
P304
P356
10.1021/PR0255654
P577
2003-03-01T00:00:00Z