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Minimum Information About a Simulation Experiment (MIASE)Dynamic rerouting of the carbohydrate flux is key to counteracting oxidative stressA consensus yeast metabolic network reconstruction obtained from a community approach to systems biologyNew types of experimental data shape the use of enzyme kinetics for dynamic network modelingRole of gB and pUS3 in Equine Herpesvirus 1 Transfer between Peripheral Blood Mononuclear Cells and Endothelial Cells: a Dynamic In Vitro ModelYeast mating and image-based quantification of spatial pattern formationAnnotation and merging of SBML models with semanticSBMLMinimum information requested in the annotation of biochemical models (MIRIAM)Alteration of protein levels during influenza virus H1N1 infection in host cells: a proteomic survey of host and virus reveals differential dynamicsImpact of acute metal stress in Saccharomyces cerevisiaeA Thermodynamic Model of Monovalent Cation Homeostasis in the Yeast Saccharomyces cerevisiaeBringing metabolic networks to life: integration of kinetic, metabolic, and proteomic data.SBtab: a flexible table format for data exchange in systems biology.Mathematical modeling of intracellular signaling pathways.Cell size at S phase initiation: an emergent property of the G1/S network.Constraint-based modeling and kinetic analysis of the Smad dependent TGF-beta signaling pathway.SBML-SAT: a systems biology markup language (SBML) based sensitivity analysis tool.Monte Carlo analysis of an ODE Model of the Sea Urchin Endomesoderm NetworkTowards a systems biology approach to mammalian cell cycle: modeling the entrance into S phase of quiescent fibroblasts after serum stimulation.TIde: a software for the systematic scanning of drug targets in kinetic network models.A quantitative study of the Hog1 MAPK response to fluctuating osmotic stress in Saccharomyces cerevisiae.What influences DNA replication rate in budding yeast?Automated ensemble modeling with modelMaGe: analyzing feedback mechanisms in the Sho1 branch of the HOG pathway.STSE: Spatio-Temporal Simulation Environment Dedicated to Biology.Molecular insights into reprogramming-initiation events mediated by the OSKM gene regulatory network.G1 and G2 arrests in response to osmotic shock are robust properties of the budding yeast cell cycle.Propagating semantic information in biochemical network modelsBiophysical properties of Saccharomyces cerevisiae and their relationship with HOG pathway activationOnset of immune senescence defined by unbiased pyrosequencing of human immunoglobulin mRNA repertoires.Biographer: web-based editing and rendering of SBGN compliant biochemical networks.Quantitative analysis of glycerol accumulation, glycolysis and growth under hyper osmotic stress.Reaction-contingency based bipartite Boolean modelling.Phosphoproteomic analyses reveal novel cross-modulation mechanisms between two signaling pathways in yeastSystematic construction of kinetic models from genome-scale metabolic networks.Global dynamic optimization approach to predict activation in metabolic pathwaysBud-Localization of CLB2 mRNA Can Constitute a Growth Rate Dependent Daughter Sizer.Stochastic simulation of Boolean rxncon models: towards quantitative analysis of large signaling networks.Viral RNA Degradation and Diffusion Act as a Bottleneck for the Influenza A Virus Infection Efficiency.Computational Lipidomics and Lipid Bioinformatics: Filling In the Blanks.The game theory of Candida albicans colonization dynamics reveals host status-responsive gene expression.
P50
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P50
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P1006
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