AMPLE: a cluster-and-truncate approach to solve the crystal structures of small proteins using rapidly computed ab initio models.
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Crystal Structure of the Nipah Virus Phosphoprotein Tetramerization DomainConversion of a disulfide bond into a thioacetal group during echinomycin biosynthesisSolution structure of the microtubule-targeting COS domain of MID1The 1.1 Å resolution structure of a periplasmic phosphate-binding protein from Stenotrophomonas maltophilia: a crystallization contaminant identified by molecular replacement using the entire Protein Data BankAn overview of heavy-atom derivatization of protein crystalsPhaser.MRage: automated molecular replacementProtein purification and crystallization artifacts: The tale usually not told.Application of the AMPLE cluster-and-truncate approach to NMR structures for molecular replacement.Exploring the speed and performance of molecular replacement with AMPLE using QUARK ab initio protein models.Routine phasing of coiled-coil protein crystal structures with AMPLEInitiating heavy-atom-based phasing by multi-dimensional molecular replacementRefinement of atomic models in high resolution EM reconstructions using Flex-EM and local assessment.Using iterative fragment assembly and progressive sequence truncation to facilitate phasing and crystal structure determination of distantly related proteinsResidue contacts predicted by evolutionary covariance extend the application of ab initio molecular replacement to larger and more challenging protein folds.Applications of contact predictions to structural biologySolving coiled-coil protein structuresMacromolecular ab initio phasing enforcing secondary and tertiary structureARCIMBOLDO_LITE: single-workstation implementation and use.Combining phase information in reciprocal space for molecular replacement with partial models.Structural basis for misregulation of kinesin KIF21A autoinhibition by CFEOM1 disease mutationsFrom local structure to a global framework: recognition of protein folds.Molecular basis for the fold organization and sarcomeric targeting of the muscle atrogin MuRF1Acknowledging Errors: Advanced Molecular Replacement with Phaser.I-TASSER-MR: automated molecular replacement for distant-homology proteins using iterative fragment assembly and progressive sequence truncation.Granular clustering of de novo protein models.Molecular symmetry-constrained systematic search approach to structure solution of the coiled-coil SRGAP2 F-BARx domain.Automated refinement of macromolecular structures at low resolution using prior information.SPATA2 Links CYLD to LUBAC, Activates CYLD, and Controls LUBAC SignalingAutomated de novo phasing and model building of coiled-coil proteins.A fragmentation and reassembly method for ab initio phasing.Automating tasks in protein structure determination with the Clipper Python module.Crystallization and preliminary X-ray crystallographic analysis of the small subunit of the heterodimeric laccase POXA3b from Pleurotus ostreatus.Extending molecular-replacement solutions with SHELXE.Structure solution with ARCIMBOLDO using fragments derived from distant homology models.Approaches to ab initio molecular replacement of α-helical transmembrane proteins.Structure and Misfolding of the Flexible Tripartite Coiled-Coil Domain of Glaucoma-Associated Myocilin.Crystal structure of human chondroadherin: solving a difficult molecular-replacement problem using de novo models.Distributed computing for macromolecular crystallography.Recent developments in MrBUMP: better search-model preparation, graphical interaction with search models, and solution improvement and assessment.Exploiting distant homologues for phasing through the generation of compact fragments, local fold refinement and partial solution combination.
P2860
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P2860
AMPLE: a cluster-and-truncate approach to solve the crystal structures of small proteins using rapidly computed ab initio models.
description
2012 nî lūn-bûn
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2012年の論文
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2012年学术文章
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name
AMPLE: a cluster-and-truncate ...... dly computed ab initio models.
@en
AMPLE: a cluster-and-truncate ...... dly computed ab initio models.
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type
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AMPLE: a cluster-and-truncate ...... dly computed ab initio models.
@en
AMPLE: a cluster-and-truncate ...... dly computed ab initio models.
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AMPLE: a cluster-and-truncate ...... dly computed ab initio models.
@en
AMPLE: a cluster-and-truncate ...... dly computed ab initio models.
@nl
P2093
P2860
P1476
AMPLE: a cluster-and-truncate ...... dly computed ab initio models.
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P2093
Jaclyn Bibby
Martyn D Winn
Ronan M Keegan
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P304
P356
10.1107/S0907444912039194
P577
2012-11-09T00:00:00Z