Development of a four-body statistical pseudo-potential to discriminate native from non-native protein conformations.
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ARID1a-DNA interactions are required for promoter occupancy by SWI/SNFIdentifying essential pairwise interactions in elastic network model using the alpha shape theory.Are distance-dependent statistical potentials considering three interacting bodies superior to two-body statistical potentials for protein structure prediction?MetaMQAP: a meta-server for the quality assessment of protein models.Towards comprehensive structural motif mining for better fold annotation in the "twilight zone" of sequence dissimilarity.Artefacts and biases affecting the evaluation of scoring functions on decoy sets for protein structure prediction.HORI: a web server to compute Higher Order Residue Interactions in protein structures.New statistical potential for quality assessment of protein models and a survey of energy functionsFree energies for coarse-grained proteins by integrating multibody statistical contact potentials with entropies from elastic network models.Statistical mechanics-based method to extract atomic distance-dependent potentials from protein structures.GOAP: a generalized orientation-dependent, all-atom statistical potential for protein structure prediction.Effective inter-residue contact definitions for accurate protein fold recognitionCoarse- and fine-grained models for proteins: evaluation by decoy discrimination.A beta-complex statistical four body contact potential combined with a hydrogen bond statistical potential recognizes the correct native structure from protein decoy sets.QA-RecombineIt: a server for quality assessment and recombination of protein modelsQuality assessment of protein model-structures based on structural and functional similarities.Discrimination of thermophilic and mesophilic proteins.PredHS: a web server for predicting protein-protein interaction hot spots by using structural neighborhood properties.From isotropic to anisotropic side chain representations: comparison of three models for residue contact estimationNeighborhood properties are important determinants of temperature sensitive mutations.The utility of comparative models and the local model quality for protein crystal structure determination by Molecular ReplacementKECSA-Movable Type Implicit Solvation Model (KMTISM).Structure and age jointly influence rates of protein evolution.Evaluation of the relative stability of liganded versus ligand-free protein conformations using Simplicial Neighborhood Analysis of Protein Packing (SNAPP) method.Perspective: Coarse-grained models for biomolecular systems.Amino acid interaction preferences in proteins.Distributions of experimental protein structures on coarse-grained free energy landscapes.Knowledge-based entropies improve the identification of native protein structures.Multibody coarse-grained potentials for native structure recognition and quality assessment of protein models.HIV-1 protease function and structure studies with the simplicial neighborhood analysis of protein packing method.Scoring protein interaction decoys using exposed residues (SPIDER): a novel multibody interaction scoring function based on frequent geometric patterns of interfacial residues.Scoring function to predict solubility mutagenesisA distance- and orientation-dependent energy function of amino acid key blocks.All-Atom Four-Body Knowledge-Based Statistical Potentials to Distinguish Native Protein Structures from Nonnative Folds.Four-body scoring function for mutagenesis.InterEvScore: a novel coarse-grained interface scoring function using a multi-body statistical potential coupled to evolution.Directional Force Originating from ATP Hydrolysis Drives the GroEL Conformational Change.Statistical energy potential: reduced representation of Dehouck-Gilis-Rooman function by selecting against decoy datasets.
P2860
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P2860
Development of a four-body statistical pseudo-potential to discriminate native from non-native protein conformations.
description
2003 nî lūn-bûn
@nan
2003年の論文
@ja
2003年学术文章
@wuu
2003年学术文章
@zh-cn
2003年学术文章
@zh-hans
2003年学术文章
@zh-my
2003年学术文章
@zh-sg
2003年學術文章
@yue
2003年學術文章
@zh
2003年學術文章
@zh-hant
name
Development of a four-body sta ...... -native protein conformations.
@en
Development of a four-body sta ...... -native protein conformations.
@nl
type
label
Development of a four-body sta ...... -native protein conformations.
@en
Development of a four-body sta ...... -native protein conformations.
@nl
prefLabel
Development of a four-body sta ...... -native protein conformations.
@en
Development of a four-body sta ...... -native protein conformations.
@nl
P356
P1433
P1476
Development of a four-body sta ...... -native protein conformations.
@en
P2093
Bala Krishnamoorthy
P304
P356
10.1093/BIOINFORMATICS/BTG186
P407
P577
2003-08-01T00:00:00Z