Underwound DNA under tension: structure, elasticity, and sequence-dependent behaviors. - Wikidata - awgldk - TriplyDB

Underwound DNA under tension: structure, elasticity, and sequence-dependent behaviors.

Underwound DNA under tension: structure, elasticity, and sequence-dependent behaviors.

http://www.wikidata.org/entity/Q50172624

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Unravelling the structural plasticity of stretched DNA under torsional constraint Transcriptional Repressor TrmBL2 from Thermococcus kodakarensis Forms Filamentous Nucleoprotein Structures and Competes with Histones for DNA Binding in a Salt- and DNA Supercoiling-dependent Manner.BIOPHYSICAL PROPERTIES OF NUCLEIC ACIDS AT SURFACES RELEVANT TO MICROARRAY PERFORMANCE.Probing the salt dependence of the torsional stiffness of DNA by multiplexed magnetic torque tweezers.Modeling DNA thermodynamics under torsional stress.Supercoiling biases the formation of loops involved in gene regulation Torque measurement at the single-molecule level Internal nonlinear dynamics of a short lattice DNA model in terms of propagating kink-antikink solitons.Interplay between DNA supercoiling and transcription elongation.Double-stranded RNA under force and torque: similarities to and striking differences from double-stranded DNA.Transfer-matrix calculations of DNA polymer micromechanics under tension and torque constraints.Experimental phase diagram of negatively supercoiled DNA measured by magnetic tweezers and fluorescence.Annealed random copolymer model of the B-Z transition in DNA: torsional responses Counterintuitive DNA Sequence Dependence in Supercoiling-Induced DNA Melting.Torque measurements reveal sequence-specific cooperative transitions in supercoiled DNA.Biocompatible and High Stiffness Nanophotonic Trap Array for Precise and Versatile Manipulation Revealing the competition between peeled ssDNA, melting bubbles, and S-DNA during DNA overstretching by single-molecule calorimetry Physiological levels of salt and polyamines favor writhe and limit twist in DNA Recent developments in single-molecule DNA mechanics.Torsionally constrained DNA for single-molecule assays: an efficient, ligation-free method DNA supercoiling during transcription.Single-molecule portrait of DNA and RNA double helices.Recent Progress on Man-Made Inorganic Nanomachines.Coexistence of twisted, plectonemic, and melted DNA in small topological domains.Competition between B-Z and B-L transitions in a single DNA molecule: Computational studies.Oncofetal HMGA2 effectively curbs unconstrained (+) and (-) DNA supercoiling Explaining the striking difference in twist-stretch coupling between DNA and RNA: A comparative molecular dynamics analysis.Torque modulates nucleosome stability and facilitates H2A/H2B dimer loss.Large-Scale Conformational Transitions in Supercoiled DNA Revealed by Coarse-Grained Simulation.Platinum-Based Drugs and DNA Interactions Studied by Single-Molecule and Bulk Measurements.Global force-torque phase diagram for the DNA double helix: structural transitions, triple points, and collapsed plectonemes.Magnetic tweezers measurements of the nanomechanical stability of DNA against denaturation at various conditions of pH and ionic strength.RNA polymerase is a powerful torsional motor Competition between curls and plectonemes near the buckling transition of stretched supercoiled DNA.Transcription under torsion.Torque spectroscopy of DNA: base-pair stability, boundary effects, backbending, and breathing dynamics.Protein-mediated loops in supercoiled DNA create large topological domains.Transfer-matrix calculations of the effects of tension and torque constraints on DNA-protein interactions Single-molecule study of the DNA denaturation phase transition in the force-torsion space The temperature dependence of the helical twist of DNA

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P2860

Underwound DNA under tension: structure, elasticity, and sequence-dependent behaviors.

http://www.wikidata.org/entity/Q50172624

description

2011 nî lūn-bûn

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2011年の論文

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2011年学术文章

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2011年学术文章

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2011年学术文章

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2011年学术文章

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2011年学术文章

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2011年学术文章

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2011年學術文章

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2011年學術文章

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name

Underwound DNA under tension: structure, elasticity, and sequence-dependent behaviors.

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Underwound DNA under tension: structure, elasticity, and sequence-dependent behaviors.

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type

label

Underwound DNA under tension: structure, elasticity, and sequence-dependent behaviors.

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Underwound DNA under tension: structure, elasticity, and sequence-dependent behaviors.

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prefLabel

Underwound DNA under tension: structure, elasticity, and sequence-dependent behaviors.

@en

Underwound DNA under tension: structure, elasticity, and sequence-dependent behaviors.

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PHYSREVLETT.107.108102

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Physical Review Letters

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Underwound DNA under tension: structure, elasticity, and sequence-dependent behaviors.

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John F Marko

http://www.w3.org/2001/XMLSchema#string

Maxim Y Sheinin

http://www.w3.org/2001/XMLSchema#string

Michelle D Wang

http://www.w3.org/2001/XMLSchema#string

Scott Forth

http://www.w3.org/2001/XMLSchema#string

P2860

Base-stacking and base-pairing contributions into thermal stability of the DNA double helix.

Behavior of supercoiled DNA.

The twisted circular form of polyoma viral DNA

Stretched and overwound DNA forms a Pauling-like structure with exposed bases

The bacteriophage straight phi29 portal motor can package DNA against a large internal force

Stretching DNA with optical tweezers.

The DNA unwinding element: a novel, cis-acting component that facilitates opening of the Escherichia coli replication origin

Happy Hollidays: 40th anniversary of the Holliday junction

In the absence of writhe, DNA relieves torsional stress with localized, sequence-dependent structural failure to preserve B-form

Nanofabricated quartz cylinders for angular trapping: DNA supercoiling torque detection.

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10.1103/PHYSREVLETT.107.108102

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