Rise of the machines--recommendations for ecologists when using next generation sequencing for microsatellite development.
about
Developing informative microsatellite makers for non-model species using reference mapping against a model species' genomeTwo different high throughput sequencing approaches identify thousands of de novo genomic markers for the genetically depleted Bornean elephantInvestigation of population structure in Gulf of Mexico Seepiophila jonesi (Polychaeta, Siboglinidae) using cross-amplified microsatellite lociHierarchical behaviour, habitat use and species size differences shape evolutionary outcomes of hybridization in a coral reef fishChallenges in analysis and interpretation of microsatellite data for population genetic studiesIsolation and characterization of microsatellite markers useful for exploring introgression among species in the diverse New Zealand cicada genus Kikihia.Development and characterization of novel microsatellite loci for Lusitanian toadfish, Halobatrachus didactylus.tropiTree: an NGS-based EST-SSR resource for 24 tropical tree species.How Well Do Molecular and Pedigree Relatedness Correspond, in Populations with Diverse Mating Systems, and Various Types and Quantities of Molecular and Demographic Data?Variable microsatellite loci for population genetic analysis of Old World monkey lice (Pedicinus sp.).Geographic variation in hybridization and ecological differentiation between three syntopic, morphologically similar species of montane lizards.Thousands of microsatellite loci from the venomous coralsnake Micrurus fulvius and variability of select loci across populations and related species.megasat: automated inference of microsatellite genotypes from sequence data.How populations differentiate despite gene flow: sexual and natural selection drive phenotypic divergence within a land fish, the Pacific leaping blennyIsolation, via 454 sequencing, and characterization of microsatellites for Vachellia farnesiana (Fabaceae: Mimosoideae)Polymorphic microsatellite loci for Virola sebifera (Myristicaceae) derived from shotgun 454 pyrosequencingIsolation and characterization of 11 novel microsatellite loci in a West African leaf-nosed bat, Hipposideros aff. ruber.Microsatellite development for an endangered bream Megalobrama pellegrini (Teleostei, Cyprinidae) using 454 sequencing.Polymorphic microsatellite loci from an indigenous Asian fungus-growing termite, Macrotermes gilvus (Blattodea: Termitidae) and cross amplification in related taxa.High-throughput microsatellite marker development in two sparid species and verification of their transferability in the family Sparidae.A shot in the genome: how accurately do shotgun 454 sequences represent a genome?iMSAT: a novel approach to the development of microsatellite loci using barcoded Illumina librariesBreakdown of phylogenetic signal: a survey of microsatellite densities in 454 shotgun sequences from 154 non model eukaryote speciesValidation of microsatellite multiplexes for parentage analysis and species discrimination in two hybridizing species of coral reef fish (Plectropomus spp., Serranidae).Microsatellite loci and the complete mitochondrial DNA sequence characterized through next generation sequencing and de novo genome assembly for the critically endangered orange-bellied parrot, Neophema chrysogaster.Microsatellite abundance across the Anthozoa and Hydrozoa in the phylum Cnidaria.Exploring Pandora's box: potential and pitfalls of low coverage genome surveys for evolutionary biologyNuclear microsatellite primers for the endangered relict fir, Abies pinsapo (Pinaceae) and cross-amplification in related Mediterranean Species.Rapid development of microsatellite markers for the endangered fish Schizothorax biddulphi (Günther) using next generation sequencing and cross-species amplification.Lessons learned from microsatellite development for nonmodel organisms using 454 pyrosequencing.Microsatellites for next-generation ecologists: a post-sequencing bioinformatics pipeline.What remains from a 454 run: estimation of success rates of microsatellite loci development in selected newt species (Calotriton asper, Lissotriton helveticus, and Triturus cristatus) and comparison with Illumina-based approaches.Environmental complexity and biodiversity: the multi-layered evolutionary history of a log-dwelling velvet worm in Montane Temperate Australia.Sequence capture using PCR-generated probes: a cost-effective method of targeted high-throughput sequencing for nonmodel organisms.Characterization of 19 new microsatellite loci for the Omani barb Garra barreimiae from 454 sequences.Development of microsatellite markers for two Australian Persoonia (Proteaceae) species using two different techniquesMicrosatellite primers identified by 454 sequencing in the floodplain tree species Eucalyptus victrix (Myrtaceae).Extremely low microsatellite diversity but distinct population structure in a long-lived threatened species, the Australian lungfish Neoceratodus forsteri (Dipnoi)Effect of microsatellite selection on individual and population genetic inferences: an empirical study using cross-specific and species-specific amplifications.Using Massive Parallel Sequencing for the development, validation, and application of population genetics markers in the invasive bivalve zebra mussel (Dreissena polymorpha).
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Rise of the machines--recommendations for ecologists when using next generation sequencing for microsatellite development.
description
2011 nî lūn-bûn
@nan
2011年の論文
@ja
2011年学术文章
@wuu
2011年学术文章
@zh
2011年学术文章
@zh-cn
2011年学术文章
@zh-hans
2011年学术文章
@zh-my
2011年学术文章
@zh-sg
2011年學術文章
@yue
2011年學術文章
@zh-hant
name
Rise of the machines--recommen ...... or microsatellite development.
@en
Rise of the machines--recommen ...... or microsatellite development.
@nl
type
label
Rise of the machines--recommen ...... or microsatellite development.
@en
Rise of the machines--recommen ...... or microsatellite development.
@nl
prefLabel
Rise of the machines--recommen ...... or microsatellite development.
@en
Rise of the machines--recommen ...... or microsatellite development.
@nl
P2860
P50
P1476
Rise of the machines--recommen ...... or microsatellite development.
@en
P2093
Alison J Fitch
P2860
P304
P356
10.1111/J.1755-0998.2011.03037.X
P577
2011-06-16T00:00:00Z