CafeMol: A Coarse-Grained Biomolecular Simulator for Simulating Proteins at Work.
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p53 dynamics upon response element recognition explored by molecular simulations.Structure-based molecular simulations reveal the enhancement of biased Brownian motions in single-headed kinesinLearning To Fold Proteins Using Energy Landscape Theory.Evolution, energy landscapes and the paradoxes of protein folding.Energy landscape and multiroute folding of topologically complex proteins adenylate kinase and 2ouf-knotEnergy landscape views for interplays among folding, binding, and allostery of calmodulin domains.Single-molecule spectroscopy reveals chaperone-mediated expansion of substrate protein.Exploration of multi-state conformational dynamics and underlying global functional landscape of maltose binding protein.How Co-translational Folding of Multi-domain Protein Is Affected by Elongation Schedule: Molecular Simulations.Partial Unwrapping and Histone Tail Dynamics in Nucleosome Revealed by Coarse-Grained Molecular SimulationsGENESIS: a hybrid-parallel and multi-scale molecular dynamics simulator with enhanced sampling algorithms for biomolecular and cellular simulations.Functional dynamics of proteinsAn experimentally-informed coarse-grained 3-Site-Per-Nucleotide model of DNA: structure, thermodynamics, and dynamics of hybridization.Characterization of folding mechanisms of Trp-cage and WW-domain by network analysis of simulations with a hybrid-resolution modelHistone acetylation dependent energy landscapes in tri-nucleosome revealed by residue-resolved molecular simulationsNear-atomic structural model for bacterial DNA replication initiation complex and its functional insights.Multiscale ensemble modeling of intrinsically disordered proteins: p53 N-terminal domain.Structural and dynamic properties of the C-terminal region of the Escherichia coli RNA chaperone Hfq: integrative experimental and computational studies.Autoinhibitory mechanisms of ERG studied by molecular dynamics simulations.Recapturing the Correlated Motions of Protein Using Coarse- Grained Models.Multi-scale ensemble modeling of modular proteins with intrinsically disordered linker regions: application to p53.Allosteric conformational change cascade in cytoplasmic dynein revealed by structure-based molecular simulations.Sequence-dependent nucleosome sliding in rotation-coupled and uncoupled modes revealed by molecular simulations.Multiscale molecular dynamics simulations of rotary motor proteins.Structures of Dynamic Protein Complexes: Hybrid Techniques to Study MAP Kinase Complexes and the ESCRT System.H4 Tails Potentially Produce the Diversity in the Orientation of Two Nucleosomes.Rotation Mechanism of Molecular Motor V1-ATPase Studied by Multiscale Molecular Dynamics Simulation.Interactions of HP1 Bound to H3K9me3 Dinucleosome by Molecular Simulations and Biochemical Assays.Couplings between hierarchical conformational dynamics from multi-time correlation functions and two-dimensional lifetime spectra: Application to adenylate kinase.Metal cofactor modulated folding and target recognition of HIV-1 NCp7.DNA sliding in nucleosomes via twist defect propagation revealed by molecular simulations.
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CafeMol: A Coarse-Grained Biomolecular Simulator for Simulating Proteins at Work.
description
2011 nî lūn-bûn
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2011年の論文
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2011年学术文章
@wuu
2011年学术文章
@zh
2011年学术文章
@zh-cn
2011年学术文章
@zh-hans
2011年学术文章
@zh-my
2011年学术文章
@zh-sg
2011年學術文章
@yue
2011年學術文章
@zh-hant
name
CafeMol: A Coarse-Grained Biomolecular Simulator for Simulating Proteins at Work.
@en
CafeMol: A Coarse-Grained Biomolecular Simulator for Simulating Proteins at Work.
@nl
type
label
CafeMol: A Coarse-Grained Biomolecular Simulator for Simulating Proteins at Work.
@en
CafeMol: A Coarse-Grained Biomolecular Simulator for Simulating Proteins at Work.
@nl
prefLabel
CafeMol: A Coarse-Grained Biomolecular Simulator for Simulating Proteins at Work.
@en
CafeMol: A Coarse-Grained Biomolecular Simulator for Simulating Proteins at Work.
@nl
P2093
P50
P356
P1476
CafeMol: A Coarse-Grained Biomolecular Simulator for Simulating Proteins at Work.
@en
P2093
Hiroo Kenzaki
Ryo Kanada
Shoji Takada
P304
P356
10.1021/CT2001045
P577
2011-05-19T00:00:00Z