Dihedral angle principal component analysis of molecular dynamics simulations.
about
Discovering conformational sub-states relevant to protein functionInvestigation of protein folding by coarse-grained molecular dynamics with the UNRES force fieldMolecular dynamics simulations on networks of heparin and collagen.Protein Structure Classification and Loop Modeling Using Multiple Ramachandran Distributions.Rotamer decomposition and protein dynamics: efficiently analyzing dihedral populations from molecular dynamics.Order parameters for macromolecules: application to multiscale simulation.Principal component and clustering analysis on molecular dynamics data of the ribosomal L11·23S subdomainKinks, loops, and protein folding, with protein A as an example.Data driven Langevin modeling of biomolecular dynamics.Characterizing a partially ordered miniprotein through folding molecular dynamics simulations: Comparison with the experimental data.Algorithmic dimensionality reduction for molecular structure analysisOrder through disorder: hyper-mobile C-terminal residues stabilize the folded state of a helical peptide. a molecular dynamics studyRecognition of the HIV capsid by the TRIM5α restriction factor is mediated by a subset of pre-existing conformations of the TRIM5α SPRY domain.Ferreting out correlations from trajectory data.Automatic workflow for the classification of local DNA conformations.SIMS: a hybrid method for rapid conformational analysis.Frequency response of a protein to local conformational perturbations.Decipher the mechanisms of protein conformational changes induced by nucleotide binding through free-energy landscape analysis: ATP binding to Hsp70.Visualizing energy landscapes with metric disconnectivity graphsMesoscopic model and free energy landscape for protein-DNA binding sites: analysis of cyanobacterial promoters.Variational cross-validation of slow dynamical modes in molecular kinetics.GeoPCA: a new tool for multivariate analysis of dihedral angles based on principal component geodesics.Understanding the cross-resistance of oseltamivir to H1N1 and H5N1 influenza A neuraminidase mutations using multidimensional computational analyses.Anomalous diffusion and dynamical correlation between the side chains and the main chain of proteins in their native stateStructural review of PPARγ in complex with ligands: Cartesian- and dihedral angle principal component analyses of X-ray crystallographic data.Insights into the Structural Dynamics of Nucleocytoplasmic Transport of tRNA by Exportin-t.Relation between free energy landscapes of proteins and dynamics.Hierarchical organization of eglin c native state dynamics is shaped by competing direct and water-mediated interactions.Computational models of protein kinematics and dynamics: beyond simulation.Free-energy landscape of a hyperstable RNA tetraloop.Local vs global motions in protein foldingPrincipal component analysis for protein folding dynamicsCations Stiffen Actin Filaments by Adhering a Key Structural Element to Adjacent Subunits.Mapping allostery through computational glycine scanning and correlation analysis of residue-residue contactsSampling conformations in high dimensions using low-dimensional distribution functionsOptimization of an AMBER force field for the artificial nucleic acid, LNA, and benchmarking with NMR of L(CAAU).Hierarchical sampling for metastable conformers determines biomolecular recognition: the case of malectin and diglucosylated N-glycan interactions.Three force fields' views of the 3(10) helix.In silico Exploration of the Conformational Universe of GPCRs.Contact- and distance-based principal component analysis of protein dynamics.
P2860
Q27438095-742E8C09-79DD-4F92-9DC7-516CDB7C832CQ30385785-2F23CD59-4562-4B52-A647-933282C53D89Q30399511-CBC2BA81-2ABD-47A3-BB27-59C2996B5E68Q30399753-8BC21915-B07D-4D92-AD75-EFE37B83D324Q30421603-8C3B45BD-E1CA-44B5-8FA2-CD54F614EF2BQ30498260-09403002-76C6-4EBD-93F3-92C45C6998B9Q30537351-0C448FFA-85EE-4E57-B214-C24C88867C3CQ30566698-E5BFD921-FD68-4448-8C8C-808D830A33F8Q30642106-337E009E-BD67-438B-95C2-5FD34479587DQ31028368-6E6F62C8-62D3-4DDF-A7F3-C6C34FBFA2EEQ33603623-A56A7583-F4EC-4E63-89ED-B70F6208A00AQ33781118-AA4E9225-0A21-4151-9DBC-248D28B2321BQ33989616-EF48148F-F9C0-4A6E-BBB8-8B217C5FF9A8Q34100902-2F8261CE-C9DC-4EBB-A439-286B0CE26B4AQ34783372-8C52BA78-D95D-4934-B4E9-4F4966A7C478Q34918623-D4C1D30C-FC6A-471B-937E-EBFDEBCDAE82Q35004436-BCE6403A-C31A-49F4-8D70-4A5D1E27FC99Q35069132-3396D70B-9467-40F3-B7B5-A817157A8B45Q35174897-571932FE-3907-4F78-BD06-A9E734629AD8Q35294264-3759B036-6C2F-411A-9DBC-CB7F4B73B0BBQ35430118-91A9CA03-05C2-42B9-A5FD-EE94CA25BB56Q35740506-015484AF-6B31-4D57-9F3C-4B587FA96BB1Q35923779-C57CF598-EC8B-49EB-9945-9DD292D6AF7AQ36069138-A81A0653-4EC1-4F5D-9A86-AE64D4CAD1DCQ36381221-33E2CE7F-903F-4BC5-AF5A-FC38FD42D8B0Q36753768-DF45D5BA-4FD6-4CB1-B559-5B8B40D2D858Q36787856-1A093038-D8DD-4D7E-B9DA-96FA5FC42BBEQ36825342-4D3DB810-18A9-42B5-A19D-F9B45AEE337BQ36900683-06EB1EDD-B56B-4992-940C-9656FB2A2229Q37021669-72E6EC93-B582-4AAA-B855-EBAC18AC9577Q37055450-242E8A45-467E-46DB-B14E-06DE8FA8FFC2Q37120734-901A7392-A789-4628-AEF1-5C23D68FD9EDQ37122474-FC88B1CF-638C-4A16-BAFD-A7EF478E8716Q37211411-78F52F07-8708-48A2-9C87-CC9135873D5EQ37330021-4D8237E4-C39F-4467-8347-001412D478B8Q37567520-28807C2D-5C06-4BBB-9737-1B0027DEB056Q38304875-0F8E05A7-E0F3-4DAA-99B4-7EF84CF5E9D4Q38597579-4702010C-2ED9-431F-B134-25D7B729EFF2Q38918909-1A8B6879-F428-44E1-8988-296905A74D39Q40152184-E0F039F7-8ABF-4579-BA96-D0753D5A9258
P2860
Dihedral angle principal component analysis of molecular dynamics simulations.
description
2007 nî lūn-bûn
@nan
2007年の論文
@ja
2007年学术文章
@wuu
2007年学术文章
@zh
2007年学术文章
@zh-cn
2007年学术文章
@zh-hans
2007年学术文章
@zh-my
2007年学术文章
@zh-sg
2007年學術文章
@yue
2007年學術文章
@zh-hant
name
Dihedral angle principal component analysis of molecular dynamics simulations.
@en
Dihedral angle principal component analysis of molecular dynamics simulations.
@nl
type
label
Dihedral angle principal component analysis of molecular dynamics simulations.
@en
Dihedral angle principal component analysis of molecular dynamics simulations.
@nl
prefLabel
Dihedral angle principal component analysis of molecular dynamics simulations.
@en
Dihedral angle principal component analysis of molecular dynamics simulations.
@nl
P2093
P2860
P356
P1476
Dihedral angle principal component analysis of molecular dynamics simulations.
@en
P2093
Alexandros Altis
Gerhard Stock
Phuong H Nguyen
Rainer Hegger
P2860
P304
P356
10.1063/1.2746330
P407
P577
2007-06-01T00:00:00Z