SmartCell, a framework to simulate cellular processes that combines stochastic approximation with diffusion and localisation: analysis of simple networks.
about
Intrinsic noise analyzer: a software package for the exploration of stochastic biochemical kinetics using the system size expansionBiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructionsNoise in transcription negative feedback loops: simulation and experimental analysisNoise-induced Min phenotypes in E. coli.Operating regimes of signaling cycles: statics, dynamics, and noise filteringDetailed simulations of cell biology with Smoldyn 2.1Association rate constants of ras-effector interactions are evolutionarily conservedProgramming cells: towards an automated 'Genetic Compiler'A new multicompartmental reaction-diffusion modeling method links transient membrane attachment of E. coli MinE to E-ring formation.Rule-based spatial modeling with diffusing, geometrically constrained moleculesMultiscale Hy3S: hybrid stochastic simulation for supercomputers.GridCell: a stochastic particle-based biological system simulator.Probability distributed time delays: integrating spatial effects into temporal models.Exploring the spatial and temporal organization of a cell's proteomeKinetic modeling of biological systems.STSE: Spatio-Temporal Simulation Environment Dedicated to Biology.URDME: a modular framework for stochastic simulation of reaction-transport processes in complex geometriesStochastic reaction-diffusion kinetics in the microscopic limit.Challenges and rewards of interaction proteomics.An accelerated algorithm for discrete stochastic simulation of reaction-diffusion systems using gradient-based diffusion and tau-leaping.ReaDDy--a software for particle-based reaction-diffusion dynamics in crowded cellular environmentsSystems biology in immunology: a computational modeling perspective.Probability-based model of protein-protein interactions on biological timescales.Kinetics in signal transduction pathways involving promiscuous oligomerizing receptors can be determined by receptor specificity: apoptosis induction by TRAIL.Space in systems biology of signaling pathways--towards intracellular molecular crowding in silico.Space as the final frontier in stochastic simulations of biological systems.Spatial simulations in systems biology: from molecules to cells.Current challenges in quantitative modeling of epidermal growth factor signaling.Synthetic biology--putting engineering into biology.Coarse-grained molecular simulation of diffusion and reaction kinetics in a crowded virtual cytoplasm.Oscillations in the immune system.Simulated de novo assembly of golgi compartments by selective cargo capture during vesicle budding and targeted vesicle fusionThe hard cell: from proteomics to a whole cell model.Shaping dots and lines: adding modularity into protein interaction networks using structural information.Modelling reaction kinetics inside cellsStochastic analysis of reaction-diffusion processes.Computational systems biology in cancer: modeling methods and applications.Reaction-diffusion master equation in the microscopic limit.Quantification of mRNA and protein and integration with protein turnover in a bacterium.Decoy receptors block TRAIL sensitivity at a supracellular level: the role of stromal cells in controlling tumour TRAIL sensitivity.
P2860
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P2860
SmartCell, a framework to simulate cellular processes that combines stochastic approximation with diffusion and localisation: analysis of simple networks.
description
2004 nî lūn-bûn
@nan
2004年の論文
@ja
2004年学术文章
@wuu
2004年学术文章
@zh
2004年学术文章
@zh-cn
2004年学术文章
@zh-hans
2004年学术文章
@zh-my
2004年学术文章
@zh-sg
2004年學術文章
@yue
2004年學術文章
@zh-hant
name
SmartCell, a framework to simu ...... : analysis of simple networks.
@en
SmartCell, a framework to simu ...... : analysis of simple networks.
@nl
type
label
SmartCell, a framework to simu ...... : analysis of simple networks.
@en
SmartCell, a framework to simu ...... : analysis of simple networks.
@nl
prefLabel
SmartCell, a framework to simu ...... : analysis of simple networks.
@en
SmartCell, a framework to simu ...... : analysis of simple networks.
@nl
P2093
P356
P1433
P1476
SmartCell, a framework to simu ...... : analysis of simple networks.
@en
P2093
Di Ventura B
Ferkinghoff-Borg J
Foglierini M
Tomás-Oliveira I
P304
P356
10.1049/SB:20045017
P577
2004-06-01T00:00:00Z