about
Transcription factors bind thousands of active and inactive regions in the Drosophila blastodermREDfly v3.0: toward a comprehensive database of transcriptional regulatory elements in DrosophilaORegAnno: an open-access community-driven resource for regulatory annotationBig genomes facilitate the comparative identification of regulatory elementsBigFoot: Bayesian alignment and phylogenetic footprinting with MCMCPAZAR: a framework for collection and dissemination of cis-regulatory sequence annotation.DISCOVER: a feature-based discriminative method for motif search in complex genomesActive enhancer positions can be accurately predicted from chromatin marks and collective sequence motif data.MORPH: probabilistic alignment combined with hidden Markov models of cis-regulatory modules.Incorporating chromatin accessibility data into sequence-to-expression modelingFormation of regulatory modules by local sequence duplicationUnmasking activation of the zygotic genome using chromosomal deletions in the Drosophila embryoFine-tuning enhancer models to predict transcriptional targets across multiple genomesRapid detection and curation of conserved DNA via enhanced-BLAT and EvoPrinterHD analysis.Sepsid even-skipped enhancers are functionally conserved in Drosophila despite lack of sequence conservation.PhyloGibbs-MP: module prediction and discriminative motif-finding by Gibbs samplingAlignment and prediction of cis-regulatory modules based on a probabilistic model of evolution.STAT is an essential activator of the zygotic genome in the early Drosophila embryo.Temporal coordination of gene networks by Zelda in the early Drosophila embryo.An alignment-free method to identify candidate orthologous enhancers in multiple Drosophila genomes.Integrating overlapping structures and background information of words significantly improves biological sequence comparison.REDfly 2.0: an integrated database of cis-regulatory modules and transcription factor binding sites in Drosophila.A systematic characterization of factors that regulate Drosophila segmentation via a bacterial one-hybrid systemThe NFI-Regulome Database: A tool for annotation and analysis of control regions of genes regulated by Nuclear Factor I transcription factors.Fine scale structural variants distinguish the genomes of Drosophila melanogaster and D. pseudoobscura.A core transcriptional network for early mesoderm development in Drosophila melanogaster.Response to the BMP gradient requires highly combinatorial inputs from multiple patterning systems in the Drosophila embryo.FlyMine: an integrated database for Drosophila and Anopheles genomics.Text-mining assisted regulatory annotationLarge-scale analysis of transcriptional cis-regulatory modules reveals both common features and distinct subclassesComputational discovery of cis-regulatory modules in Drosophila without prior knowledge of motifs.Accelerated sequence divergence of conserved genomic elements in Drosophila melanogasterCompo: composite motif discovery using discrete modelsPositive and negative selection on noncoding DNA in Drosophila simulans.The ANISEED database: digital representation, formalization, and elucidation of a chordate developmental program.Use of a Drosophila genome-wide conserved sequence database to identify functionally related cis-regulatory enhancers.Simple Expression Domains Are Regulated by Discrete CRMs During Drosophila Oogenesis.cis-Decoder discovers constellations of conserved DNA sequences shared among tissue-specific enhancers.Thousands of cis-regulatory sequence combinations are shared by Arabidopsis and poplar.TWO-LAYER MATHEMATICAL MODELING OF GENE EXPRESSION: INCORPORATING DNA-LEVEL INFORMATION AND SYSTEM DYNAMICS.
P2860
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P2860
description
2005 nî lūn-bûn
@nan
2005年の論文
@ja
2005年学术文章
@wuu
2005年学术文章
@zh
2005年学术文章
@zh-cn
2005年学术文章
@zh-hans
2005年学术文章
@zh-my
2005年学术文章
@zh-sg
2005年學術文章
@yue
2005年學術文章
@zh-hant
name
REDfly: a Regulatory Element Database for Drosophila.
@en
REDfly: a Regulatory Element Database for Drosophila.
@nl
type
label
REDfly: a Regulatory Element Database for Drosophila.
@en
REDfly: a Regulatory Element Database for Drosophila.
@nl
prefLabel
REDfly: a Regulatory Element Database for Drosophila.
@en
REDfly: a Regulatory Element Database for Drosophila.
@nl
P2093
P356
P1433
P1476
REDfly: a Regulatory Element Database for Drosophila
@en
P2093
P304
P356
10.1093/BIOINFORMATICS/BTI794
P407
P577
2005-11-22T00:00:00Z