An empirical assessment of long-branch attraction artefacts in deep eukaryotic phylogenomics. - Wikidata - awgldk - TriplyDB

An empirical assessment of long-branch attraction artefacts in deep eukaryotic phylogenomics.

An empirical assessment of long-branch attraction artefacts in deep eukaryotic phylogenomics.

http://www.wikidata.org/entity/Q52994145

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Phylogenomic analyses predict sistergroup relationship of nucleariids and fungi and paraphyly of zygomycetes with significant support Long-branch attraction bias and inconsistency in Bayesian phylogenetics Accounting for horizontal gene transfers explains conflicting hypotheses regarding the position of aquificales in the phylogeny of Bacteria Heterotachy and long-branch attraction in phylogenetics Separating the wheat from the chaff: mitigating the effects of noise in a plastome phylogenomic data set from Pinus L. (Pinaceae)Nucleomorph genome of Hemiselmis andersenii reveals complete intron loss and compaction as a driver of protein structure and function Ecdysozoan mitogenomics: evidence for a common origin of the legged invertebrates, the Panarthropoda Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic "supergroups"Rooting the domain archaea by phylogenomic analysis supports the foundation of the new kingdom Proteoarchaeota Genomic data do not support comb jellies as the sister group to all other animals The sections of Alternaria: formalizing species-group concepts Parallel Mitogenome Sequencing Alleviates Random Rooting Effect in Phylogeography Origin and evolution of retinoid isomerization machinery in vertebrate visual cycle: hint from jawless vertebrates An extreme case of plant-insect codiversification: figs and fig-pollinating wasps.Loss of different inverted repeat copies from the chloroplast genomes of Pinaceae and cupressophytes and influence of heterotachy on the evaluation of gymnosperm phylogeny What is the phylogenetic signal limit from mitogenomes? The reconciliation between mitochondrial and nuclear data in the Insecta class phylogeny Single-copy nuclear genes resolve the phylogeny of the holometabolous insects Rooting the eutherian tree: the power and pitfalls of phylogenomics The origin and diversification of eukaryotes: problems with molecular phylogenetics and molecular clock estimation Widespread Discordance of Gene Trees with Species Tree in Drosophila: Evidence for Incomplete Lineage Sorting Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model Arthropod phylogenetics in light of three novel millipede (myriapoda: diplopoda) mitochondrial genomes with comments on the appropriateness of mitochondrial genome sequence data for inferring deep level relationships Plasmodium Apicoplast Gln-tRNAGln Biosynthesis Utilizes a Unique GatAB Amidotransferase Essential for Erythrocytic Stage Parasites An integrated phylogenomic approach toward pinpointing the origin of mitochondria Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests Insect phylogenomics: exploring the source of incongruence using new transcriptomic data.A SURVEY OF BANGIALES (RHODOPHYTA) BASED ON MULTIPLE MOLECULAR MARKERS REVEALS CRYPTIC DIVERSITY(1).Capturing the Phylogeny of Holometabola with Mitochondrial Genome Data and Bayesian Site-Heterogeneous Mixture Models.SCaFoS: a tool for selection, concatenation and fusion of sequences for phylogenomics.Acoel flatworms are not platyhelminthes: evidence from phylogenomics Molecular phylogeny of diplomonads and enteromonads based on SSU rRNA, alpha-tubulin and HSP90 genes: implications for the evolutionary history of the double karyomastigont of diplomonads.SlowFaster, a user-friendly program for slow-fast analysis and its application on phylogeny of Blastocystis A class frequency mixture model that adjusts for site-specific amino acid frequencies and improves inference of protein phylogeny.PROCOV: maximum likelihood estimation of protein phylogeny under covarion models and site-specific covarion pattern analysis.AIR: A batch-oriented web program package for construction of supermatrices ready for phylogenomic analyses Multiple independent fusions of glucose-6-phosphate dehydrogenase with enzymes in the pentose phosphate pathway Addressing inter-gene heterogeneity in maximum likelihood phylogenomic analysis: yeasts revisited.Broadly sampled multigene analyses yield a well-resolved eukaryotic tree of life.Phylogenetic relationships within the Opisthokonta based on phylogenomic analyses of conserved single-copy protein domains Less is more in mammalian phylogenomics: AT-rich genes minimize tree conflicts and unravel the root of placental mammals.

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P2860

An empirical assessment of long-branch attraction artefacts in deep eukaryotic phylogenomics.

http://www.wikidata.org/entity/Q52994145

description

2005 nî lūn-bûn

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2005年の論文

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2005年学术文章

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2005年学术文章

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2005年学术文章

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2005年学术文章

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2005年学术文章

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2005年学术文章

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2005年學術文章

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2005年學術文章

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name

An empirical assessment of lon ...... deep eukaryotic phylogenomics.

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An empirical assessment of lon ...... deep eukaryotic phylogenomics.

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type

label

An empirical assessment of lon ...... deep eukaryotic phylogenomics.

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An empirical assessment of lon ...... deep eukaryotic phylogenomics.

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prefLabel

An empirical assessment of lon ...... deep eukaryotic phylogenomics.

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An empirical assessment of lon ...... deep eukaryotic phylogenomics.

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Systematic Biology

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An empirical assessment of lon ...... deep eukaryotic phylogenomics.

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Gaëtan Poncelin de Raucourt

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Henner Brinkmann

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Hervé Philippe

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Yan Zhou

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P2860

The evolutionary position of nematodes.

Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi

The highly reduced genome of an enslaved algal nucleus

The analysis of 100 genes supports the grouping of three highly divergent amoebae: Dictyostelium, Entamoeba, and Mastigamoeba

From gene trees to organismal phylogeny in prokaryotes: the case of the gamma-Proteobacteria

MrBayes 3: Bayesian phylogenetic inference under mixed models

TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing

A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood

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743-757

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scholarly article

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10.1080/10635150500234609

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5

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54

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Mark van der Giezen

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2005-10-01T00:00:00Z

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7522382

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