Evaluation of the conformational free energies of loops in proteins.
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Advances in Homology Protein Structure ModelingMolecular dynamics study of the energetic, mechanistic, and structural implications of a closed phosphate tube in ncdModeling of loops in protein structuresSelecting near-native conformations in homology modeling: the role of molecular mechanics and solvation termsConformational analysis of a nitroxide side chain in an α-helix with density functional theory.Simultaneous modeling of multiple loops in proteins.Free energy based populations of interconverting microstates of a cyclic peptide lead to the experimental NMR data.Combining phage display and molecular modeling to map the epitope of a neutralizing antitoxin antibody.A supersecondary structure library and search algorithm for modeling loops in protein structures.A free energy analysis of nucleic acid base stacking in aqueous solutionEvaluating conformational free energies: the colony energy and its application to the problem of loop prediction.Molecular dynamics and binding specificity analysis of the bovine immunodeficiency virus BIV Tat-TAR complexThe dynamics, structure, and conformational free energy of proline-containing antifreeze glycoprotein.Sampling multiple scoring functions can improve protein loop structure prediction accuracy.Optimization of the GB/SA solvation model for predicting the structure of surface loops in proteins.Conformational dynamics in loop swap mutants of homologous fibronectin type III domains.Prediction of protein loop structures using a local move Monte Carlo approach and a grid-based force fieldA classical and ab initio study of the interaction of the myosin triphosphate binding domain with ATP.Modeling electron transfer thermodynamics in protein complexes: interaction between two cytochromes c(3).Accuracy and reliability of the scaling-relaxation method for loop closure: an evaluation based on extensive and multiple copy conformational samplings.Prediction of protein complexes using empirical free energy functions.Minimalist explicit solvation models for surface loops in proteins.Loop modeling: Sampling, filtering, and scoring.On the calculation of binding free energies using continuum methods: application to MHC class I protein-peptide interactions.Development of a new physics-based internal coordinate mechanics force field and its application to protein loop modeling.Analysis of the stability of looped-out and stacked-in conformations of an adenine bulge in DNA using a continuum model for solvent and ions.Kinase conformations: a computational study of the effect of ligand binding.Structural determinants of trypsin affinity and specificity for cationic inhibitors.Does conformational free energy distinguish loop conformations in proteins?Pathways of H2 toward the active site of [NiFe]-hydrogenase.Identification of a "glycine-loop"-like coiled structure in the 34 AA Pro,Gly,Met repeat domain of the biomineral-associated protein, PM27.Exploring the selectivity of a ligand complex with CDK2/CDK1: a molecular dynamics simulation approach.Identifying native-like protein structures using physics-based potentials.Influence of rotational energy barriers to the conformational search of protein loops in molecular dynamics and ranking the conformations.Hydration effects on the electrostatic potential around tuftsin.Molecular dynamics and continuum solvent studies of the stability of polyG-polyC and polyA-polyT DNA duplexes in solution.Distinguishing native conformations of proteins from decoys with an effective free energy estimator based on the OPLS all-atom force field and the Surface Generalized Born solvent modelModeling Loops in Protein StructuresModeling Structures and Motions of Loops in Protein Molecules
P2860
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P2860
Evaluation of the conformational free energies of loops in proteins.
description
1994 nî lūn-bûn
@nan
1994年の論文
@ja
1994年学术文章
@wuu
1994年学术文章
@zh-cn
1994年学术文章
@zh-hans
1994年学术文章
@zh-my
1994年学术文章
@zh-sg
1994年學術文章
@yue
1994年學術文章
@zh
1994年學術文章
@zh-hant
name
Evaluation of the conformational free energies of loops in proteins.
@en
Evaluation of the conformational free energies of loops in proteins.
@nl
type
label
Evaluation of the conformational free energies of loops in proteins.
@en
Evaluation of the conformational free energies of loops in proteins.
@nl
prefLabel
Evaluation of the conformational free energies of loops in proteins.
@en
Evaluation of the conformational free energies of loops in proteins.
@nl
P356
P1433
P1476
Evaluation of the conformational free energies of loops in proteins.
@en
P2093
P304
P356
10.1002/PROT.340180205
P407
P577
1994-02-01T00:00:00Z