about
Social and Genetic Networks of HIV-1 Transmission in New York CityModeling HIV-1 drug resistance as episodic directional selectionIDEPI: rapid prediction of HIV-1 antibody epitopes and other phenotypic features from sequence data using a flexible machine learning platformLess is more: an adaptive branch-site random effects model for efficient detection of episodic diversifying selectionEvolutionary origins of human herpes simplex viruses 1 and 2Evolutionary fingerprinting of genes.Maximum likelihood inference of imprinting and allele-specific expression from EST data.Using HIV Sequence and Epidemiologic Data to Assess the Effect of Self-referral Testing for Acute HIV Infection on Incident Diagnoses in San Diego, CaliforniaGenome-wide survey of allele-specific splicing in humans.Frequent toggling between alternative amino acids is driven by selection in HIV-1Benchmarking multi-rate codon models.Correcting the bias of empirical frequency parameter estimators in codon modelsCodonTest: modeling amino acid substitution preferences in coding sequences.Epitope discovery with phylogenetic hidden Markov models.Non-negative matrix factorization for learning alignment-specific models of protein evolution.Detecting phylogenetic signal in mutualistic interaction networks using a Markov process modelDetecting individual sites subject to episodic diversifying selection.Comprehensive sieve analysis of breakthrough HIV-1 sequences in the RV144 vaccine efficacy trialRELAX: detecting relaxed selection in a phylogenetic framework.On the validity of evolutionary models with site-specific parameters.Gene-wide identification of episodic selectionA random effects branch-site model for detecting episodic diversifying selection.Seminal Shedding of CMV and HIV Transmission among Men Who Have Sex with Men.Deep sequencing reveals minor protease resistance mutations in patients failing a protease inhibitor regimen.FUBAR: a fast, unconstrained bayesian approximation for inferring selection.Models of coding sequence evolutionExtensive purifying selection acting on synonymous sites in HIV-1 Group M sequences.Compartmentalized HIV rebound in the central nervous system after interruption of antiretroviral therapy.Evidence of HIV-1 adaptation to host HLA alleles following chimp-to-human transmissionStandard vaccines increase HIV-1 transcription during antiretroviral therapy.Robust inference of positive selection from recombining coding sequences.Phylogenetic relatedness of HIV-1 donor and recipient populations.A model of directional selection applied to the evolution of drug resistance in HIV-1.Strelka2: fast and accurate calling of germline and somatic variantsStrelka2: Fast and accurate variant calling for clinical sequencing applicationsA Bayesian Model Comparison Approach to Inferring Positive SelectionDETECTING MOLECULAR EVIDENCE OF POSITIVE DARWINIAN SELECTIONVery Low Power to Detect Asymmetric Divergence of Duplicated GenesAutomatic learning of dialogue strategy using dialogue simulation and reinforcement learning
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description
researcher
@en
wetenschapper
@nl
հետազոտող
@hy
name
Konrad Scheffler
@ast
Konrad Scheffler
@en
Konrad Scheffler
@es
Konrad Scheffler
@nl
Konrad Scheffler
@sl
type
label
Konrad Scheffler
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Konrad Scheffler
@en
Konrad Scheffler
@es
Konrad Scheffler
@nl
Konrad Scheffler
@sl
prefLabel
Konrad Scheffler
@ast
Konrad Scheffler
@en
Konrad Scheffler
@es
Konrad Scheffler
@nl
Konrad Scheffler
@sl
P106
P21
P2456
P31
P496
0000-0002-6041-8367