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DotKnot: pseudoknot prediction using the probability dot plot under a refined energy modelPredicting pseudoknotted structures across two RNA sequencesChanging the Game: Using Integrative Genomics to Probe Virulence Mechanisms of the Stem Rust Pathogen Puccinia graminis f. sp. triticiKnotSeeker: heuristic pseudoknot detection in long RNA sequences.Genome sequencing and comparative genomics of the broad host-range pathogen Rhizoctonia solani AG8.Comparative genomics of Australian isolates of the wheat stem rust pathogen Puccinia graminis f. sp. tritici reveals extensive polymorphism in candidate effector genesA comparative hidden Markov model analysis pipeline identifies proteins characteristic of cereal-infecting fungi.Advances and challenges in computational prediction of effectors from plant pathogenic fungi.Genome-Wide Analysis in Three Fusarium Pathogens Identifies Rapidly Evolving Chromosomes and Genes Associated with Pathogenicity.Comparative genomics and prediction of conditionally dispensable sequences in legume-infecting Fusarium oxysporum formae speciales facilitates identification of candidate effectors.LOCALIZER: subcellular localization prediction of both plant and effector proteins in the plant cell.Evaluation of Secretion Prediction Highlights Differing Approaches Needed for Oomycete and Fungal Effectors.Comparative secretome analysis of Rhizoctonia solani isolates with different host ranges reveals unique secretomes and cell death inducing effectors.Computational Methods for Predicting Effectors in Rust Pathogens.EffectorP: predicting fungal effector proteins from secretomes using machine learning.Diversifying selection in the wheat stem rust fungus acts predominantly on pathogen-associated gene families and reveals candidate effectors.ApoplastP: prediction of effectors and plant proteins in the apoplast using machine learning.Loss of AvrSr50 by somatic exchange in stem rust leads to virulence for Sr50 resistance in wheat.A Near-Complete Haplotype-Phased Genome of the Dikaryotic Wheat Stripe Rust Fungus Puccinia striiformis f. sp. tritici Reveals High Interhaplotype Diversity.De Novo Assembly and Phasing of Dikaryotic Genomes from Two Isolates of Puccinia coronata f. sp. avenae, the Causal Agent of Oat Crown Rust.Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0.A near complete haplotype-phased genome of the dikaryotic wheat stripe rust fungus Puccinia striiformis f. sp. tritici reveals high inter-haplotype diversityIdentification and profiling of narrow-leafed lupin (Lupinus angustifolius) microRNAs during seed development
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description
onderzoeker
@nl
researcher
@en
հետազոտող
@hy
name
Jana Sperschneider
@ast
Jana Sperschneider
@en
Jana Sperschneider
@es
Jana Sperschneider
@nl
type
label
Jana Sperschneider
@ast
Jana Sperschneider
@en
Jana Sperschneider
@es
Jana Sperschneider
@nl
prefLabel
Jana Sperschneider
@ast
Jana Sperschneider
@en
Jana Sperschneider
@es
Jana Sperschneider
@nl
P106
P1153
23993365900
P31
P496
0000-0002-9385-8588