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Ten Simple Rules for Developing Usable Software in Computational BiologyComprehensive analysis of high-throughput screens with HiTSeekRClassification of breast cancer subtypes by combining gene expression and DNA methylation data.DeepBlue epigenomic data server: programmatic data retrieval and analysis of epigenome region setsOn the performance of de novo pathway enrichment.Efficient sample tracking with OpenLabFrameworkUsing Docker Compose for the Simple Deployment of an Integrated Drug Target Screening Platform.Protein-based nanotoxicology assessment strategy.Interactive microbial distribution analysis using BioAtlas.DeepBlueR: large-scale epigenomic analysis in R.Robust de novo pathway enrichment with KeyPathwayMiner 5.KeyPathwayMinerWeb: online multi-omics network enrichment.OpenLabNotes--An Electronic Laboratory Notebook Extension for OpenLabFramework.Microarray R-based analysis of complex lysate experiments with MIRACLE.De novo pathway-based biomarker identification.Corrigendum to "Protein-based nanotoxicology assessment strategy" [Nanomed Nanotechnol Biol Med. 2017;13(3):1229-1233].JAMI - Fast computation of Conditional Mutual Information for ceRNA network analysis.Efficient Management of High-Throughput Screening Libraries with SAVANAHComprehensive evaluation of computational cell-type quantification methods for immuno-oncologyCFP suppresses breast cancer cell growth by TES-mediated upregulation of the transcription factor DDIT3Quantitative comparison of within-sample heterogeneity scores for DNA methylation dataThe mRNA-binding Protein TTP/ZFP36 in Hepatocarcinogenesis and Hepatocellular Carcinoma
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