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Analysis methods for studying the 3D architecture of the genomeNeocentromeres Provide Chromosome Segregation Accuracy and Centromere Clustering to Multiple Loci along a Candida albicans ChromosomeStatistical confidence estimation for Hi-C data reveals regulatory chromatin contactsIdentifying multi-locus chromatin contacts in human cells using tethered multiple 3CScalable steady state analysis of Boolean biological regulatory networks.A multi-task graph-clustering approach for chromosome conformation capture data sets identifies conserved modules of chromosomal interactions.Genomic interaction profiles in breast cancer reveal altered chromatin architecture.Three-dimensional modeling of the P. falciparum genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expressionMetabolic network alignment in large scale by network compressionA statistical approach for inferring the 3D structure of the genome.Multiple dimensions of epigenetic gene regulation in the malaria parasite Plasmodium falciparum: gene regulation via histone modifications, nucleosome positioning and nuclear architecture in P. falciparumAccurate identification of centromere locations in yeast genomes using Hi-C.Bipartite structure of the inactive mouse X chromosomeComprehensive identification and analysis of human accelerated regulatory DNAPredictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks17q21 asthma-risk variants switch CTCF binding and regulate IL-2 production by T cells.A predictive modeling approach for cell line-specific long-range regulatory interactions.Topologically associating domains and their long-range contacts are established during early G1 coincident with the establishment of the replication-timing programForm and function of topologically associating genomic domains in budding yeast.Joint annotation of chromatin state and chromatin conformation reveals relationships among domain types and identifies domains of cell-type-specific expression.Implications of COMT long-range interactions on the phenotypic variability of 22q11.2 deletion syndrome.Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of human lincRNA genes.A predictive modeling approach for cell line-specific long-range regulatory interactions.Identification of copy number variations and translocations in cancer cells from Hi-C data.A fast and accurate algorithm for comparative analysis of metabolic pathways.Using DNase Hi-C techniques to map global and local three-dimensional genome architecture at high resolution.Combined RNA-seq and RAT-seq mapping of long noncoding RNAs in pluripotent reprogrammingIntegrative detection and analysis of structural variation in cancer genomesIdentification of significant chromatin contacts from HiChIP data by FitHiChIPThe role of 3D genome organization in disease: From compartments to single nucleotidesNSD2 overexpression drives clustered chromatin and transcriptional changes in a subset of insulated domainsComparative 3D genome organization in apicomplexan parasitesTET enzymes augment activation-induced deaminase (AID) expression via 5-hydroxymethylcytosine modifications at the Aicda superenhancerHuman Eosinophils Express a Distinct Gene Expression Program in Response to IL-3 Compared with Common β-Chain Cytokines IL-5 and GM-CSFIdentifying statistically significant chromatin contacts from Hi-C data with FitHiC2Single-cell transcriptomic analysis of tissue-resident memory T cells in human lung cancer
P50
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P50
description
researcher
@en
wetenschapper
@nl
հետազոտող
@hy
name
Ferhat Ay
@ast
Ferhat Ay
@en
Ferhat Ay
@es
Ferhat Ay
@nl
type
label
Ferhat Ay
@ast
Ferhat Ay
@en
Ferhat Ay
@es
Ferhat Ay
@nl
prefLabel
Ferhat Ay
@ast
Ferhat Ay
@en
Ferhat Ay
@es
Ferhat Ay
@nl
P106
P1153
26647990500
P2456
P31
P496
0000-0002-0708-6914