about
Multiplexed labeling of genomic loci with dCas9 and engineered sgRNAs using CRISPRainbow.Incorporating phylogenetic-based covarying mutations into RNAalifold for RNA consensus structure predictionDetecting transcription of ribosomal protein pseudogenes in diverse human tissues from RNA-seq dataComputational analysis of RNA structures with chemical probing data.The long noncoding RNA SPRIGHTLY acts as an intranuclear organizing hub for pre-mRNA moleculesSimultaneous folding of alternative RNA structures with mutual constraints: an application to next-generation sequencing-based RNA structure probing.Discovering non-coding RNA elements in Drosophila 3' untranslated regionsEpigenetic regulation of microRNA genes and the role of miR-34b in cell invasion and motility in human melanomaFinding consensus stable local optimal structures for aligned RNA sequences and its application to discovering riboswitch elementsProbeAlign: incorporating high-throughput sequencing-based structure probing information into ncRNA homology search.Clustering RNA structural motifs in ribosomal RNAs using secondary structural alignment.Efficient alignment of RNA secondary structures using sparse dynamic programmingRNAMotifScanX: a graph alignment approach for RNA structural motif identification.Multicolor CRISPR labeling of chromosomal loci in human cells.The Non-Coding RNA Ontology (NCRO): a comprehensive resource for the unification of non-coding RNA biology.STAR3D: a stack-based RNA 3D structural alignment toolCRISPR-Cas9 nuclear dynamics and target recognition in living cells.Genome-wide methylated CpG island profiles of melanoma cells reveal a melanoma coregulation networkCompAnnotate: a comparative approach to annotate base-pairing interactions in RNA 3D structures.Epigenetic regulation of microRNA-375 and its role in melanoma development in humans.Translation repression via modulation of the cytoplasmic poly(A)-binding protein in the inflammatory response.RNAMotifScan: automatic identification of RNA structural motifs using secondary structural alignment.Consensus folding of unaligned RNA sequences revisited.WebSTAR3D: a web server for RNA 3D structural alignment.A sequence-based filtering method for ncRNA identification and its application to searching for riboswitch elements.Searching genomes for noncoding RNA using FastR.FastR: fast database search tool for non-coding RNA.Structural alignment of pseudoknotted RNA.A memory efficient method for structure-based RNA multiple alignment.De novo discovery of structural motifs in RNA 3D structures through clustering.CRISPR-Sirius: RNA scaffolds for signal amplification in genome imagingMulti-allelic positional Burrows-Wheeler transform.Efficient haplotype matching between a query and a panel for genealogical searchPractical considerations on performing and analyzing CLIP-seq experiments to identify transcriptomic-wide RNA-protein interactionsAccurate and Efficient Mapping of the Cross-Linked microRNA-mRNA Duplex ReadsRaPID: ultra-fast, powerful, and accurate detection of segments identical by descent (IBD) in biobank-scale cohortsCell cycle- and genomic distance-dependent dynamics of a discrete chromosomal regionTranscriptomic Profiling of Ribosomal Protein Pseudogenes in Diverse Human Tissues
P50
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P50
description
researcher
@en
wetenschapper
@nl
հետազոտող
@hy
name
Shaojie Zhang
@ast
Shaojie Zhang
@en
Shaojie Zhang
@es
Shaojie Zhang
@nl
type
label
Shaojie Zhang
@ast
Shaojie Zhang
@en
Shaojie Zhang
@es
Shaojie Zhang
@nl
prefLabel
Shaojie Zhang
@ast
Shaojie Zhang
@en
Shaojie Zhang
@es
Shaojie Zhang
@nl
P106
P31
P496
0000-0002-4051-5549