about
Plectoneme tip bubbles: coupled denaturation and writhing in supercoiled DNA.Design principles for rapid folding of knotted DNA nanostructuresCoarse-grained modelling of supercoiled RNA.Introducing improved structural properties and salt dependence into a coarse-grained model of DNA.Modelling toehold-mediated RNA strand displacement.DNA hairpins destabilize duplexes primarily by promoting melting rather than by inhibiting hybridization.The stability of a crystal with diamond structure for patchy particles with tetrahedral symmetry.Optimizing DNA nanotechnology through coarse-grained modeling: a two-footed DNA walker.Coarse-graining DNA for simulations of DNA nanotechnology.Modelling the self-assembly of virus capsids.Sequence-dependent thermodynamics of a coarse-grained DNA model.Ni-based nanoalloys: towards thermally stable highly magnetic materials.DNA bipedal motor walking dynamics: an experimental and theoretical study of the dependency on step size.Characterizing the Motion of Jointed DNA Nanostructures Using a Coarse-Grained Model.Hierarchical bounding structures for efficient virial computations: Towards a realistic molecular description of cholesterics.Publisher's Note: "Perturbative density functional methods for cholesteric liquid crystals" [J. Chem. Phys. 146, 184504 (2017)].Local order parameters for use in driving homogeneous ice nucleation with all-atom models of water.Rolling circle amplification shows a sinusoidal template length-dependent amplification bias.Direct Simulation of the Self-Assembly of a Small DNA Origami.Force-Induced Rupture of a DNA Duplex: From Fundamentals to Force Sensors.Evolutionary dynamics in a simple model of self-assembly.DNA nanotweezers studied with a coarse-grained model of DNA.Self-assembly and evolution of homomeric protein complexes.Identifying communities within energy landscapes.Structural relaxation in atomic clusters: master equation dynamics.Multi-scale coarse-graining for the study of assembly pathways in DNA-brick self-assembly.Characterizing DNA Star-Tile-Based Nanostructures Using a Coarse-Grained Model.Characterizing the bending and flexibility induced by bulges in DNA duplexes.The role of loop stacking in the dynamics of DNA hairpin formation.Coarse-grained simulations of DNA overstretching.The effect of topology on the structure and free energy landscape of DNA kissing complexes.The effect of temperature jumps during polymer crystallizationForce-Induced Unravelling of DNA OrigamiRe-entrant phase behavior for systems with competition between phase separation and self-assemblyPhase diagram of model anisotropic particles with octahedral symmetryReversible self-assembly of patchy particles into monodisperse icosahedral clustersStructural transitions in the 309-atom magic number Lennard-Jones clusterCoarse-grained modelling of the structural properties of DNA origamiEntropic effects on the size dependence of cluster structurePolytetrahedral clusters
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P50
description
onderzoeker
@nl
researcher
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հետազոտող
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name
J Doye
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J Doye
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J Doye
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J Doye
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J Doye
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J Doye
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J Doye
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J Doye
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J Doye
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J Doye
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J Doye
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J Doye
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P106
P1153
7003642343
P31
P496
0000-0002-2226-9524