about
Getting started in text miningOpenDMAP: an open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expressionU-Compare: share and compare text mining tools with UIMABiomedical language processing: what's beyond PubMed?Gene Ontology synonym generation rules lead to increased performance in biomedical concept recognition.BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domainsText mining for the biocuration workflowLarge-scale biomedical concept recognition: an evaluation of current automatic annotators and their parametersCombining heterogenous data for prediction of disease related and pharmacogenesMining the pharmacogenomics literature--a survey of the state of the artU-Compare bio-event meta-service: compatible BioNLP event extraction servicesText mining and manual curation of chemical-gene-disease networks for the comparative toxicogenomics database (CTD)An open-source framework for large-scale, flexible evaluation of biomedical text mining systems.The textual characteristics of traditional and Open Access scientific journals are similar.Concept annotation in the CRAFT corpus.MutationFinder: a high-performance system for extracting point mutation mentions from text.GeneRIF quality assurance as summary revision.HIGH-PRECISION BIOLOGICAL EVENT EXTRACTION: EFFECTS OF SYSTEM AND OF DATA.BioCreAtIvE task1A: entity identification with a stochastic tagger.Nominalization and alternations in biomedical language.Themes in biomedical natural language processing: BioNLP08.The structural and content aspects of abstracts versus bodies of full text journal articles are different.Exploring species-based strategies for gene normalization.Assessing the similarity of surface linguistic features related to epilepsy across pediatric hospitals.Manual curation is not sufficient for annotation of genomic databasesChapter 16: text mining for translational bioinformatics.A critical review of PASBio's argument structures for biomedical verbs.Sentiment Analysis of Suicide Notes: A Shared TaskCorpus refactoring: a feasibility studyAn overview of the BioCreative 2012 Workshop Track III: interactive text mining task.Overview of BioCreative II gene normalizationConcept recognition for extracting protein interaction relations from biomedical textOntology quality assurance through analysis of term transformations.Coreference annotation and resolution in the Colorado Richly Annotated Full Text (CRAFT) corpus of biomedical journal articlesHabitat-Lite: a GSC case study based on free text terms for environmental metadata.Implications of compositionality in the gene ontology for its curation and usage.A nonparametric Bayesian method of translating machine learning scores to probabilities in clinical decision support.TRANSLATING BIOLOGY: TEXT MINING TOOLS THAT WORK.Integrating text mining into high-throughput assay analysis.Clinical Information Extraction at the CLEF eHealth Evaluation lab 2016.
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