about
Approximate protein structural alignment in polynomial time.Small libraries of protein fragments model native protein structures accurately.Comprehensive evaluation of protein structure alignment methods: scoring by geometric measures.Protein structure comparison: implications for the nature of 'fold space', and structure and function prediction.Using an alignment of fragment strings for comparing protein structures.Redundancy-weighting for better inference of protein structural features.Sequence-similar, structure-dissimilar protein pairs in the PDB.FragBag, an accurate representation of protein structure, retrieves structural neighbors from the entire PDB quickly and accurately.A library of protein surface patches discriminates between native structures and decoys generated by structure prediction servers.Maps of protein structure space reveal a fundamental relationship between protein structure and function.Global view of the protein universe.ConTemplate Suggests Possible Alternative Conformations for a Query Protein of Known Structure.CyToStruct: Augmenting the Network Visualization of Cytoscape with the Power of Molecular Viewers.On the universe of protein folds.Using ConTemplate and the PDB to explore conformational space: on the detection of rare protein conformations.Complex evolutionary footprints revealed in an analysis of reused protein segments of diverse lengths.Faster algorithms for optimal multiple sequence alignment based on pairwise comparisons.VISTAL--a new 2D visualization tool of protein 3D structural alignments.A Novel Geometry-Based Approach to Infer Protein Interface Similarity.Similarity between the Usher Plug and the Repeating Domain of an Ice-adhesin: Evolution via Surface ReshapingRepresentation of the Protein Universe using Classifications, Maps, and NetworksNavigating Among Known Structures in Protein SpaceEfflux Pumps Represent Possible Evolutionary Convergence onto the β-Barrel FoldEfflux Pumps Represent Possible Evolutionary Convergence onto the Beta Barrel FoldEvolutionary pathways of repeat protein topology in bacterial outer membrane proteinsOn the evolution of protein-adenine binding
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description
researcher ORCID ID = 0000-0001-8523-1614
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wetenschapper
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name
Rachel Kolodny
@ast
Rachel Kolodny
@en
Rachel Kolodny
@es
Rachel Kolodny
@nl
type
label
Rachel Kolodny
@ast
Rachel Kolodny
@en
Rachel Kolodny
@es
Rachel Kolodny
@nl
prefLabel
Rachel Kolodny
@ast
Rachel Kolodny
@en
Rachel Kolodny
@es
Rachel Kolodny
@nl
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P31
P496
0000-0001-8523-1614