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Data integration gets 'Sloppy'PHYLOViZ Online: web-based tool for visualization, phylogenetic inference, analysis and sharing of minimum spanning treesTypOn: the microbial typing ontologyEvaluation of jackknife and bootstrap for defining confidence intervals for pairwise agreement measuresBacillus invictae sp. nov., isolated from a health product.PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods.Assessment of band-based similarity coefficients for automatic type and subtype classification of microbial isolates analyzed by pulsed-field gel electrophoresisPHYLOViZ: phylogenetic inference and data visualization for sequence based typing methods.The use of machine learning methodologies to analyse antibiotic and biocide susceptibility in Staphylococcus aureus.Not seeing the forest for the trees: size of the minimum spanning trees (MSTs) forest and branch significance in MST-based phylogenetic analysisComparing Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry and Phenotypic and Molecular Methods for Identification of Species within the Streptococcus anginosus Group.Clinical and molecular epidemiology of Acinetobacter baumannii bloodstream infections in an endemic setting.Adjusted Wallace coefficient as a measure of congruence between typing methods.Epidemiological Surveillance and Typing Methods to Track Antibiotic Resistant Strains Using High Throughput Sequencing.Beta-hemolytic Streptococcus dysgalactiae strains isolated from horses are a genetically distinct population within the Streptococcus dysgalactiae taxonScarlet fever is caused by a limited number of Streptococcus pyogenes lineages and is associated with the exotoxin genes ssa, speA and speC.Properties of novel international drug-resistant pneumococcal clones identified in day-care centers of Lisbon, Portugal.Automatic determination of NET (neutrophil extracellular traps) coverage in fluorescent microscopy images.Illustration of a common framework for relating multiple typing methods by application to macrolide-resistant Streptococcus pyogenes.A widespread family of polymorphic toxins encoded by temperate phages.Phylogenetic and clonality analysis of Bacillus pumilus isolates uncovered a highly heterogeneous population of different closely related species and clones.Comparison of molecular typing methods for characterization of Staphylococcus epidermidis: proposal for clone definition.Analysis of typing methods for epidemiological surveillance of both methicillin-resistant and methicillin-susceptible Staphylococcus aureus strains.Analysis of invasiveness of pneumococcal serotypes and clones circulating in Portugal before widespread use of conjugate vaccines reveals heterogeneous behavior of clones expressing the same serotype.Emergence of the Same Successful Clade among Distinct Populations of emm89 Streptococcus pyogenes in Multiple Geographic Regions.Natural history of drug-resistant clones of Streptococcus pneumoniae colonizing healthy children in Portugal.A Primer on Microbial Bioinformatics for non-bioinformaticians.Serum lipid alterations in GBA-associated Parkinson's disease.Origin, evolution, and distribution of the molecular machinery for biosynthesis of sialylated lipooligosaccharide structures in Campylobacter coli.Fast phylogenetic inference from typing data.GrapeTree: visualization of core genomic relationships among 100,000 bacterial pathogensserotype 3 in Mexico (1994-2017): decrease of the unusual CC4909 lineage post-PCV13 introductionPlasmid ATLAS: plasmid visual analytics and identification in high-throughput sequencing dataESCMID postgraduate education course: regional capacity building for integration of next-generation sequencing in the clinical microlabIncreasing macrolide resistance among Streptococcus agalactiae causing invasive disease in non-pregnant adults was driven by a single capsular-transformed lineage, Portugal, 2009 to 2015Large-Scale Simulations of Bacterial Populations Over Complex NetworksDraft Genome Sequence of Escherichia coli DSM 12242, a Highly Efficient Host Strain for the Isolation of Somatic Coliphages
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description
investigador
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researcher
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name
J A Carriço
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J A Carriço
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type
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J A Carriço
@en
J A Carriço
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J A Carriço
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J A Carriço
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P31
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0000-0002-5274-2722