Double digest RADseq: an inexpensive method for de novo SNP discovery and genotyping in model and non-model species - Test2 - elhamkhani - TriplyDB

Double digest RADseq: an inexpensive method for de novo SNP discovery and genotyping in model and non-model species

Double digest RADseq: an inexpensive method for de novo SNP discovery and genotyping in model and non-model species

http://www.wikidata.org/entity/Q21090909

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Genotyping-by-sequencing for Populus population genomics: an assessment of genome sampling patterns and filtering approaches Genetic Drift, Purifying Selection and Vector Genotype Shape Dengue Virus Intra-host Genetic Diversity in Mosquitoes Emerging Genomic Tools for Legume Breeding: Current Status and Future Prospects Harnessing the power of RADseq for ecological and evolutionary genomics Genome Wide Sampling Sequencing for SNP Genotyping: Methods, Challenges and Future Development Expanding Omics Resources for Improvement of Soybean Seed Composition Traits Population genetics of the Asian tiger mosquito Aedes albopictus, an invasive vector of human diseases Exploiting genetic diversity from landraces in wheat breeding for adaptation to climate change Pedigree-free estimates of heritability in the wild: promising prospects for selfing populations Geogenetic patterns in mouse lemurs (genus Microcebus) reveal the ghosts of Madagascar's forests past A Parallel Population Genomic and Hydrodynamic Approach to Fishery Management of Highly-Dispersive Marine Invertebrates: The Case of the Fijian Black-Lip Pearl Oyster Pinctada margaritifera A highly robust and optimized sequence-based approach for genetic polymorphism discovery and genotyping in large plant populations.Genotyping of whole genome amplified reduced representation libraries reveals a cryptic population of Culicoides brevitarsis in the Northern Territory, Australia Overview on the Role of Advance Genomics in Conservation Biology of Endangered Species Genotyping by sequencing approaches to characterise crop genomes: choosing the right tool for the right application Beyond the Coral Triangle: high genetic diversity and near panmixia in Singapore's populations of the broadcast spawning sea star Protoreaster nodosus Phylogeographic model selection leads to insight into the evolutionary history of four-eyed frogs Historical Environment Is Reflected in Modern Population Genetics and Biogeography of an Island Endemic Lizard (Xantusia riversiana reticulata)Spatially Explicit Analysis of Genome-Wide SNPs Detects Subtle Population Structure in a Mobile Marine Mammal, the Harbor Porpoise.Multispecies Outcomes of Sympatric Speciation after Admixture with the Source Population in Two Radiations of Nicaraguan Crater Lake Cichlids A novel method of microsatellite genotyping-by-sequencing using individual combinatorial barcoding The aggregate site frequency spectrum for comparative population genomic inference Diabolical survival in Death Valley: recent pupfish colonization, gene flow and genetic assimilation in the smallest species range on earth Predicting RAD-seq Marker Numbers across the Eukaryotic Tree of Life Exploring the utility of cross-laboratory RAD-sequencing datasets for phylogenetic analysis A novel sex-determining QTL in Nile tilapia (Oreochromis niloticus)Aedes aegypti has spatially structured and seasonally stable populations in Yogyakarta, Indonesia Contrasting genetic structure between mitochondrial and nuclear markers in the dengue fever mosquito from Rio de Janeiro: implications for vector control Strong phylogeographic structure in a sedentary seabird, the Stewart Island Shag (Leucocarbo chalconotus)Evolutionary diversifications of plants on the Qinghai-Tibetan Plateau Comparative species divergence across eight triplets of spiny lizards (Sceloporus) using genomic sequence data A hybrid genetic linkage map of two ecologically and morphologically divergent Midas cichlid fishes (Amphilophus spp.) obtained by massively parallel DNA sequencing (ddRADSeq)The Genetic Basis of Upland/Lowland Ecotype Divergence in Switchgrass (Panicum virgatum)Genetic linkage of distinct adaptive traits in sympatrically speciating crater lake cichlid fish Incipient sympatric speciation in Midas cichlid fish from the youngest and one of the smallest crater lakes in Nicaragua due to differential use of the benthic and limnetic habitats?Genetic diversity is largely unpredictable but scales with museum occurrences in a species-rich clade of Australian lizards.Limitations of climatic data for inferring species boundaries: insights from speckled rattlesnakes Rapid genetic and morphologic divergence between captive and wild populations of the endangered Leon Springs pupfish, Cyprinodon bovinus.The genetic architecture of novel trophic specialists: larger effect sizes are associated with exceptional oral jaw diversification in a pupfish adaptive radiation.RESTseq--efficient benchtop population genomics with RESTriction Fragment SEQuencing

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Double digest RADseq: an inexpensive method for de novo SNP discovery and genotyping in model and non-model species

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Emily H Kay

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P2860

Population structure and eigenanalysis

Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags

MUSCLE: multiple sequence alignment with high accuracy and high throughput

A map of human genome variation from population-scale sequencing

Mapping short DNA sequencing reads and calling variants using mapping quality scores

Fast and accurate short read alignment with Burrows-Wheeler transform

A large genome center's improvements to the Illumina sequencing system.

BLAT--the BLAST-like alignment tool

OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes

The Sequence Alignment/Map format and SAMtools

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