SSW library: an SIMD Smith-Waterman C/C++ library for use in genomic applications
about
Unraveling the message: insights into comparative genomics of the naked mole-ratParasail: SIMD C library for global, semi-global, and local pairwise sequence alignmentsMaxSSmap: a GPU program for mapping divergent short reads to genomes with the maximum scoring subsequenceAn efficient and scalable analysis framework for variant extraction and refinement from population-scale DNA sequence data.k-SLAM: accurate and ultra-fast taxonomic classification and gene identification for large metagenomic data setsMOSAIK: a hash-based algorithm for accurate next-generation sequencing short-read mapping.Toolbox for mobile-element insertion detection on cancer genomes.svviz: a read viewer for validating structural variants.Wham: Identifying Structural Variants of Biological ConsequenceSW#db: GPU-Accelerated Exact Sequence Similarity Database Search.Prediction of compound-target interactions of natural products using large-scale drug and protein information.Viral deep sequencing needs an adaptive approach: IRMA, the iterative refinement meta-assembler.Edlib: a C/C++ library for fast, exact sequence alignment using edit distance.BatAlign: an incremental method for accurate alignment of sequencing readsIn vivo genome editing and organoid transplantation models of colorectal cancer and metastasisSTEAK: A specific tool for transposable elements and retrovirus detection in high-throughput sequencing data.Survival of pancreatic cancer cells lacking KRAS function.ISEScan: automated identification of insertion sequence elements in prokaryotic genomes.CRISPR-Cpf1 mediates efficient homology-directed repair and temperature-controlled genome editing.Canary: an atomic pipeline for clinical amplicon assays.HashClone: a new tool to quantify the minimal residual disease in B-cell lymphoma from deep sequencing data.Graphtyper enables population-scale genotyping using pangenome graphs.Profiling of Short-Tandem-Repeat Disease Alleles in 12,632 Human Whole Genomes.Genomic basis of recombination suppression in the hybrid between Caenorhabditis briggsae and C. nigoni.A Wnt-producing niche drives proliferative potential and progression in lung adenocarcinoma.Using pseudoalignment and base quality to accurately quantify microbial community composition.Introducing difference recurrence relations for faster semi-global alignment of long sequences.Clustering huge protein sequence sets in linear time.State-of-the-Art in Smith–Waterman Protein Database Search on HPC Platforms
P2860
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P2860
SSW library: an SIMD Smith-Waterman C/C++ library for use in genomic applications
description
2013 nî lūn-bûn
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2013 թուականին հրատարակուած գիտական յօդուած
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2013 թվականին հրատարակված գիտական հոդված
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2013年の論文
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2013年論文
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2013年論文
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2013年論文
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2013年論文
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2013年論文
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name
SSW library: an SIMD Smith-Waterman C/C++ library for use in genomic applications
@ast
SSW library: an SIMD Smith-Waterman C/C++ library for use in genomic applications
@en
SSW library: an SIMD Smith-Waterman C/C++ library for use in genomic applications
@en-gb
SSW library: an SIMD Smith-Waterman C/C++ library for use in genomic applications
@nl
type
label
SSW library: an SIMD Smith-Waterman C/C++ library for use in genomic applications
@ast
SSW library: an SIMD Smith-Waterman C/C++ library for use in genomic applications
@en
SSW library: an SIMD Smith-Waterman C/C++ library for use in genomic applications
@en-gb
SSW library: an SIMD Smith-Waterman C/C++ library for use in genomic applications
@nl
altLabel
SSW Library: An SIMD Smith-Waterman C/C++ Library for Use in Genomic Applications
@en
prefLabel
SSW library: an SIMD Smith-Waterman C/C++ library for use in genomic applications
@ast
SSW library: an SIMD Smith-Waterman C/C++ library for use in genomic applications
@en
SSW library: an SIMD Smith-Waterman C/C++ library for use in genomic applications
@en-gb
SSW library: an SIMD Smith-Waterman C/C++ library for use in genomic applications
@nl
P2093
P2860
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SSW library: an SIMD Smith-Waterman C/C++ library for use in genomic applications
@en
P2093
Erik P Garrison
Gabor T Marth
Mengyao Zhao
Wan-Ping Lee
P2536
P2860
P304
P3181
P356
10.1371/JOURNAL.PONE.0082138
P407
P577
2013-01-01T00:00:00Z