An extensive evaluation of read trimming effects on Illumina NGS data analysis
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Sequencing pools of individuals — mining genome-wide polymorphism data without big fundingFrom Conventional to Next Generation Sequencing of Epstein-Barr Virus GenomesBest practices for evaluating single nucleotide variant calling methods for microbial genomicsComputational characterisation of cancer molecular profiles derived using next generation sequencingToward reliable biomarker signatures in the age of liquid biopsies - how to standardize the small RNA-Seq workflowA protocol for RNA methylation differential analysis with MeRIP-Seq data and exomePeak R/Bioconductor package.PathoQC: Computationally Efficient Read Preprocessing and Quality Control for High-Throughput Sequencing Data Sets.Detrimental effects of duplicate reads and low complexity regions on RNA- and ChIP-seq data.Evaluation of preprocessing, mapping and postprocessing algorithms for analyzing whole genome bisulfite sequencing data.Choice of reference-guided sequence assembler and SNP caller for analysis of Listeria monocytogenes short-read sequence data greatly influences rates of error.TRAPLINE: a standardized and automated pipeline for RNA sequencing data analysis, evaluation and annotationGBS-SNP-CROP: a reference-optional pipeline for SNP discovery and plant germplasm characterization using variable length, paired-end genotyping-by-sequencing data.Transcriptome and metabolite profiling reveals that prolonged drought modulates the phenylpropanoid and terpenoid pathway in white grapes (Vitis vinifera L.).Data- and knowledge-based modeling of gene regulatory networks: an update.SeqPurge: highly-sensitive adapter trimming for paired-end NGS dataFrom next-generation resequencing reads to a high-quality variant data set.Genomics pipelines and data integration: challenges and opportunities in the research setting.The build-up of osmotic stress responses within the growing root apex using kinematics and RNA-sequencing.The peculiar landscape of repetitive sequences in the olive (Olea europaea L.) genome.Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end readsRBM10 promotes transformation-associated processes in small cell lung cancer and is directly regulated by RBM5.Estimating Phred scores of Illumina base calls by logistic regression and sparse modeling.Isolation and partial characterization of bacteriophages infecting Pseudomonas syringae pv. actinidiae, causal agent of kiwifruit bacterial canker.Quality assessment and control of tissue specific RNA-seq libraries of Drosophila transgenic RNAi models.Immunoglobulin transcript sequence and somatic hypermutation computation from unselected RNA-seq reads in chronic lymphocytic leukemia.Analysis of the genetic diversity of influenza A viruses using next-generation DNA sequencing.The central nervous system transcriptome of the weakly electric brown ghost knifefish (Apteronotus leptorhynchus): de novo assembly, annotation, and proteomics validation.UrQt: an efficient software for the Unsupervised Quality trimming of NGS data.An Exploration into Fern Genome Space.Fecal microbiota analysis: an overview of sample collection methods and sequencing strategies.Exome Capture with Heterologous Enrichment in Pig (Sus scrofa)Proteogenomic analysis of psoriasis reveals discordant and concordant changes in mRNA and protein abundance.Trimming of sequence reads alters RNA-Seq gene expression estimates.A case study for cloud based high throughput analysis of NGS data using the globus genomics system.Fast, accurate, and lightweight analysis of BS-treated reads with ERNE 2.Measurements of Intrahost Viral Diversity Are Extremely Sensitive to Systematic Errors in Variant Calling.Comparing and Evaluating Metagenome Assembly Tools from a Microbiologist's Perspective - Not Only Size Matters!Phylogenomics using formalin-fixed and 100+ year-old intractable natural history specimens.Analysis of High-Throughput RNA Bisulfite Sequencing Data.Stress-induced and epigenetic-mediated maize transcriptome regulation study by means of transcriptome reannotation and differential expression analysis
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P2860
An extensive evaluation of read trimming effects on Illumina NGS data analysis
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2013 nî lūn-bûn
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2013 թուականին հրատարակուած գիտական յօդուած
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2013 թվականին հրատարակված գիտական հոդված
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2013年の論文
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2013年論文
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2013年論文
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2013年論文
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2013年論文
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2013年論文
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2013年论文
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An extensive evaluation of read trimming effects on Illumina NGS data analysis
@ast
An extensive evaluation of read trimming effects on Illumina NGS data analysis
@en
An extensive evaluation of read trimming effects on Illumina NGS data analysis
@en-gb
An extensive evaluation of read trimming effects on Illumina NGS data analysis
@nl
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label
An extensive evaluation of read trimming effects on Illumina NGS data analysis
@ast
An extensive evaluation of read trimming effects on Illumina NGS data analysis
@en
An extensive evaluation of read trimming effects on Illumina NGS data analysis
@en-gb
An extensive evaluation of read trimming effects on Illumina NGS data analysis
@nl
altLabel
An Extensive Evaluation of Read Trimming Effects on Illumina NGS Data Analysis
@en
prefLabel
An extensive evaluation of read trimming effects on Illumina NGS data analysis
@ast
An extensive evaluation of read trimming effects on Illumina NGS data analysis
@en
An extensive evaluation of read trimming effects on Illumina NGS data analysis
@en-gb
An extensive evaluation of read trimming effects on Illumina NGS data analysis
@nl
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P1476
An extensive evaluation of read trimming effects on Illumina NGS data analysis
@en
P2093
Michele Morgante
Simone Scalabrin
P2860
P304
P3181
P356
10.1371/JOURNAL.PONE.0085024
P407
P577
2013-01-01T00:00:00Z