Fast mapping of short sequences with mismatches, insertions and deletions using index structures
about
A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium melilotiCRISPR-Cas systems in the cyanobacterium Synechocystis sp. PCC6803 exhibit distinct processing pathways involving at least two Cas6 and a Cmr2 proteinDesigning Efficient Spaced Seeds for SOLiD Read MappingREADemption-a tool for the computational analysis of deep-sequencing-based transcriptome dataGenome-wide transcription start site mapping of Bradyrhizobium japonicum grown free-living or in symbiosis - a rich resource to identify new transcripts, proteins and to study gene regulationFunctional characterization of the RNA chaperone Hfq in the opportunistic human pathogen Stenotrophomonas maltophiliaIntegrative "omics"-approach discovers dynamic and regulatory features of bacterial stress responsesTarget recognition, RNA methylation activity and transcriptional regulation of the Dictyostelium discoideum Dnmt2-homologue (DnmA)RNA sequencing analysis of the broad-host-range strain Sinorhizobium fredii NGR234 identifies a large set of genes linked to quorum sensing-dependent regulation in the background of a traI and ngrI deletion mutantRNase J is required for processing of a small number of RNAs in Rhodobacter sphaeroidesFunctional high-throughput screening identifies the miR-15 microRNA family as cellular restriction factors for Salmonella infectionRole of oxygen and the OxyR protein in the response to iron limitation in Rhodobacter sphaeroidesProfound impact of Hfq on nutrient acquisition, metabolism and motility in the plant pathogen Agrobacterium tumefaciensArgonaute proteins affect siRNA levels and accumulation of a novel extrachromosomal DNA from the Dictyostelium retrotransposon DIRS-1Genome-wide transcription start site profiling in biofilm-grown Burkholderia cenocepacia J2315ViennaNGS: A toolbox for building efficient next- generation sequencing analysis pipelinesGlobal transcriptional start site mapping using differential RNA sequencing reveals novel antisense RNAs in Escherichia coliNext-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineeringstarBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq dataGenome-wide transcriptome analysis of the plant pathogen Xanthomonas identifies sRNAs with putative virulence functionsIdentification of regulatory RNAs in Bacillus subtilisAlignment of Short Reads: A Crucial Step for Application of Next-Generation Sequencing Data in Precision MedicineProspects and limitations of full-text index structures in genome analysisAdaptable probabilistic mapping of short reads using position specific scoring matrices.The transcriptional landscape of Chlamydia pneumoniaeThe primary transcriptome of the Escherichia coli O104:H4 pAA plasmid and novel insights into its virulence gene expression and regulationAdvantages of Array-Based Technologies for Pre-Emptive Pharmacogenomics TestingDifferential and coherent processing patterns from small RNAsConservation and losses of non-coding RNAs in avian genomesQuo vadis venomics? A roadmap to neglected venomous invertebratesTSSAR: TSS annotation regime for dRNA-seq data.Bioinformatics of prokaryotic RNAsPhylogenetic position of a copper age sheep (Ovis aries) mitochondrial DNAAnalysis of the Microprocessor in Dictyostelium: The Role of RbdB, a dsRNA Binding ProteinSuitability of Different Mapping Algorithms for Genome-wide Polymorphism Scans with Pool-Seq DatasRNA154 a newly identified regulator of nitrogen fixation in Methanosarcina mazei strain Gö1Transcription Profiling of Bacillus subtilis Cells Infected with AR9, a Giant Phage Encoding Two Multisubunit RNA PolymerasesGenome-wide identification of transcriptional start sites in the haloarchaeon Haloferax volcanii based on differential RNA-Seq (dRNA-Seq)cis-Encoded Small RNAs, a Conserved Mechanism for Repression of Polysaccharide Utilization in BacteroidesPhenotypic Heterogeneity Affects Stenotrophomonas maltophilia K279a Colony Morphotypes and β-Lactamase Expression
P2860
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P2860
Fast mapping of short sequences with mismatches, insertions and deletions using index structures
description
2009 nî lūn-bûn
@nan
2009 թուականի Սեպտեմբերին հրատարակուած գիտական յօդուած
@hyw
2009 թվականի սեպտեմբերին հրատարակված գիտական հոդված
@hy
2009年の論文
@ja
2009年論文
@yue
2009年論文
@zh-hant
2009年論文
@zh-hk
2009年論文
@zh-mo
2009年論文
@zh-tw
2009年论文
@wuu
name
Fast mapping of short sequence ...... letions using index structures
@ast
Fast mapping of short sequence ...... letions using index structures
@en
Fast mapping of short sequence ...... letions using index structures
@en-gb
Fast mapping of short sequence ...... letions using index structures
@nl
type
label
Fast mapping of short sequence ...... letions using index structures
@ast
Fast mapping of short sequence ...... letions using index structures
@en
Fast mapping of short sequence ...... letions using index structures
@en-gb
Fast mapping of short sequence ...... letions using index structures
@nl
altLabel
Fast Mapping of Short Sequence ...... letions Using Index Structures
@en
prefLabel
Fast mapping of short sequence ...... letions using index structures
@ast
Fast mapping of short sequence ...... letions using index structures
@en
Fast mapping of short sequence ...... letions using index structures
@en-gb
Fast mapping of short sequence ...... letions using index structures
@nl
P2093
P2860
P50
P3181
P1476
Fast mapping of short sequence ...... letions using index structures
@en
P2093
Christian Otto
Stefan Kurtz
Steve Hoffmann
P2860
P304
P3181
P356
10.1371/JOURNAL.PCBI.1000502
P407
P577
2009-09-01T00:00:00Z