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Reliability and reproducibility issues in DNA microarray measurements

Reliability and reproducibility issues in DNA microarray measurements

http://www.wikidata.org/entity/Q24289394

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Deep sequencing whole transcriptome exploration of the σE regulon in Neisseria meningitidis Characterizing the expression of the human olfactory receptor gene family using a novel DNA microarray Microarray and cDNA sequence analysis of transcription during nerve-dependent limb regeneration Identification of novel mitosis regulators through data mining with human centromere/kinetochore proteins as group queries Cytokines and cytokine profiles in human autoimmune diseases and animal models of autoimmunity The MicroArray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements Review of the literature examining the correlation among DNA microarray technologies Label-free microarray imaging for direct detection of DNA hybridization and single-nucleotide mismatches Ion channel gene expression in the inner ear Transforming function of the LSM1 oncogene in human breast cancers with the 8p11-12 amplicon The end of the microarray Tower of Babel: will universal standards lead the way?Prognostic Values of microRNAs in Colorectal Cancer Establishment of the epithelial-specific transcriptome of normal and malignant human breast cells based on MPSS and array expression data Plasticity of Candida albicans Biofilms Novel Approaches for Fungal Transcriptomics from Host Samples Microarray experiments and factors which affect their reliability Transcriptional response of Mexican axolotls to Ambystoma tigrinum virus (ATV) infection Current Technologies and Recent Developments for Screening of HPV-Associated Cervical and Oropharyngeal Cancers.Repeatability of published microarray gene expression analyses Integrating murine gene expression studies to understand obstructive lung disease due to chronic inhaled endotoxin Genome-wide analysis in human colorectal cancer cells reveals ischemia-mediated expression of motility genes via DNA hypomethylation Prioritizing genomic drug targets in pathogens: application to Mycobacterium tuberculosis A novel statistical algorithm for gene expression analysis helps differentiate pregnane X receptor-dependent and independent mechanisms of toxicity Systematic identification of rhythmic genes reveals camk1gb as a new element in the circadian clockwork Concordance between RNA-sequencing data and DNA microarray data in transcriptome analysis of proliferative and quiescent fibroblasts Sequencing of the needle transcriptome from Norway spruce (Picea abies Karst L.) reveals lower substitution rates, but similar selective constraints in gymnosperms and angiosperms Analysis of gene expression in resynthesized Brassica napus Allopolyploids using arabidopsis 70mer oligo microarrays Regulation of perR expression by iron and PerR in Campylobacter jejuni Hepatic stellate cells: protean, multifunctional, and enigmatic cells of the liver Expression Comparison of Oil Biosynthesis Genes in Oil Palm Mesocarp Tissue Using Custom Array.Four Arabidopsis AREB/ABF transcription factors function predominantly in gene expression downstream of SnRK2 kinases in abscisic acid signalling in response to osmotic stress.BIOPHYSICAL PROPERTIES OF NUCLEIC ACIDS AT SURFACES RELEVANT TO MICROARRAY PERFORMANCE.Predicting cancer involvement of genes from heterogeneous data.M-BISON: microarray-based integration of data sources using networks.THINK Back: KNowledge-based Interpretation of High Throughput data.Microarray-based prediction of Parkinson's disease using clinical data as additional response variables.Identification of human HK genes and gene expression regulation study in cancer from transcriptomics data analysis.Variation-preserving normalization unveils blind spots in gene expression profiling.Integration and mining of malaria molecular, functional and pharmacological data: how far are we from a chemogenomic knowledge space?Data Requirements for Model-Based Cancer Prognosis Prediction

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Reliability and reproducibility issues in DNA microarray measurements

http://www.wikidata.org/entity/Q24289394

description

2006 nî lūn-bûn

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2006 թուականի Փետրուարին հրատարակուած գիտական յօդուած

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2006 թվականի փետրվարին հրատարակված գիտական հոդված

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2006年の論文

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2006年論文

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2006年论文

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Reliability and reproducibility issues in DNA microarray measurements

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Reliability and reproducibility issues in DNA microarray measurements

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Reliability and reproducibility issues in DNA microarray measurements

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Reliability and reproducibility issues in DNA microarray measurements

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Reliability and reproducibility issues in DNA microarray measurements

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Reliability and reproducibility issues in DNA microarray measurements

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Reliability and reproducibility issues in DNA microarray measurements

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Reliability and reproducibility issues in DNA microarray measurements

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Reliability and reproducibility issues in DNA microarray measurements

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Reliability and reproducibility issues in DNA microarray measurements

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Reliability and reproducibility issues in DNA microarray measurements

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Reliability and reproducibility issues in DNA microarray measurements

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Trends in Genetics

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Reliability and reproducibility issues in DNA microarray measurements

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Purvesh Khatri

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P2860

Why most published research findings are false

Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset

Evaluation of gene expression measurements from commercial microarray platforms

A sequence-based identification of the genes detected by probesets on the Affymetrix U133 plus 2.0 array

Performance evaluation of commercial short-oligonucleotide microarrays and the impact of noise in making cross-platform correlations

Comparing cDNA and oligonucleotide array data: concordance of gene expression across platforms for the NCI-60 cancer cells

A comparative analysis of data generated using two different target preparation methods for hybridization to high-density oligonucleotide microarrays

Sequence dependence of cross-hybridization on short oligo microarrays.

Sources of variability and effect of experimental approach on expression profiling data interpretation

An oligonucleotide microarray for microRNA expression analysis based on labeling RNA with quantum dot and nanogold probe

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reproducibility

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