Kinefold web server for RNA/DNA folding path and structure prediction including pseudoknots and knots - Test2 - elhamkhani - TriplyDB

Kinefold web server for RNA/DNA folding path and structure prediction including pseudoknots and knots

Kinefold web server for RNA/DNA folding path and structure prediction including pseudoknots and knots

http://www.wikidata.org/entity/Q24530528

about

New insights from cluster analysis methods for RNA secondary structure prediction Computational analysis of noncoding RNAs Aptamers in analytics.Network Properties of the Ensemble of RNA Structures Fast, approximate kinetics of RNA folding Thermodynamic characterization of the Saccharomyces cerevisiae telomerase RNA pseudoknot domain in vitro Attenuation of loop-receptor interactions with pseudoknot formation A viral RNA competitively inhibits the antiviral endoribonuclease domain of RNase L The RNA Structure of cis-acting Translational Elements of the Chloroplast psbC mRNA in Chlamydomonas reinhardtii Mechanistic insights into type I toxin antitoxin systems in Helicobacter pylori: the importance of mRNA folding in controlling toxin expression Discovery of replicating circular RNAs by RNA-seq and computational algorithms.Prediction of RNA multiloop and pseudoknot conformations from a lattice-based, coarse-grain tertiary structure model.Measurements of translation initiation from all 64 codons in E. coli.TRANSAT-- method for detecting the conserved helices of functional RNA structures, including transient, pseudo-knotted and alternative structures The centrality of RNA for engineering gene expression Increased leukotoxin production: Characterization of 100 base pairs within the 530 base pair leukotoxin promoter region of Aggregatibacter actinomycetemcomitans.Computing the partition function for kinetically trapped RNA secondary structures.Thermodynamics of RNA structures by Wang-Landau sampling.A Spinach molecular beacon triggered by strand displacement Characterization of coding synonymous and non-synonymous variants in ADAMTS13 using ex vivo and in silico approaches Identification and characterization of the Schizosaccharomyces pombe TER1 telomerase RNA.Characterization of 582 natural and synthetic terminators and quantification of their design constraints.The role of a metastable RNA secondary structure in hepatitis delta virus genotype III RNA editing.Asymptotic number of hairpins of saturated RNA secondary structures.Structural analysis of adenovirus VAI RNA defines the mechanism of inhibition of PKR.Absence of knots in known RNA structures.Comprehensive analysis of RNA-protein interactions by high-throughput sequencing-RNA affinity profiling.Vfold: a web server for RNA structure and folding thermodynamics prediction.Design, synthesis, and application of Spinach molecular beacons triggered by strand displacement.Nascent RNA structure modulates the transcriptional dynamics of RNA polymerases.Communication between RNA folding domains revealed by folding of circularly permuted ribozymes.TFIIB aptamers inhibit transcription by perturbing PIC formation at distinct stages.Transient RNA structure features are evolutionarily conserved and can be computationally predicted.Non-polyadenylated transcription in embryonic stem cells reveals novel non-coding RNA related to pluripotency and differentiation Asymptotic structural properties of quasi-random saturated structures of RNA.Laboratory evolution of artificially expanded DNA gives redesignable aptamers that target the toxic form of anthrax protective antigen.Global transcriptional response to heat shock of the legume symbiont Mesorhizobium loti MAFF303099 comprises extensive gene downregulation On the importance of cotranscriptional RNA structure formation Competitive folding of RNA structures at a termination-antitermination site.Toward a next-generation atlas of RNA secondary structure.

P2860

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P2860

Kinefold web server for RNA/DNA folding path and structure prediction including pseudoknots and knots

http://www.wikidata.org/entity/Q24530528

description

2005 nî lūn-bûn

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2005 թուականի Յուլիսին հրատարակուած գիտական յօդուած

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2005 թվականի հուլիսին հրատարակված գիտական հոդված

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2005年の論文

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2005年学术文章

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2005年学术文章

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2005年学术文章

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2005年學術文章

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name

Kinefold web server for RNA/DN ...... ncluding pseudoknots and knots

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Kinefold web server for RNA/DN ...... ncluding pseudoknots and knots

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Kinefold web server for RNA/DN ...... ncluding pseudoknots and knots

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Kinefold web server for RNA/DN ...... ncluding pseudoknots and knots

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type

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Kinefold web server for RNA/DN ...... ncluding pseudoknots and knots

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Kinefold web server for RNA/DN ...... ncluding pseudoknots and knots

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Kinefold web server for RNA/DN ...... ncluding pseudoknots and knots

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Kinefold web server for RNA/DN ...... ncluding pseudoknots and knots

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prefLabel

Kinefold web server for RNA/DN ...... ncluding pseudoknots and knots

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Kinefold web server for RNA/DN ...... ncluding pseudoknots and knots

@en

Kinefold web server for RNA/DN ...... ncluding pseudoknots and knots

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Kinefold web server for RNA/DN ...... ncluding pseudoknots and knots

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P1433

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P1433

Nucleic Acids Research

P1476

Kinefold web server for RNA/DN ...... ncluding pseudoknots and knots

@en

P2093

A Xayaphoummine

http://www.w3.org/2001/XMLSchema#string

H Isambert

http://www.w3.org/2001/XMLSchema#string

T Bucher

http://www.w3.org/2001/XMLSchema#string

P2860

Mfold web server for nucleic acid folding and hybridization prediction

Metastable structures and refolding kinetics in hok mRNA of plasmid R1

CARNAC: folding families of related RNAs

Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure

Coaxial stacking of helixes enhances binding of oligoribonucleotides and improves predictions of RNA folding

Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information

Fast algorithm for predicting the secondary structure of single-stranded RNA

Prediction and statistics of pseudoknots in RNA structures using exactly clustered stochastic simulations

A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics

Co-transcriptional folding is encoded within RNA genes

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W605-10

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scholarly article

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808318

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10.1093/NAR/GKI447

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Web Server issue

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33

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2005-07-01T00:00:00Z

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7762416

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15980546

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1160208

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