Gaussian-weighted RMSD superposition of proteins: a structural comparison for flexible proteins and predicted protein structures. - Test2 - elhamkhani - TriplyDB

Gaussian-weighted RMSD superposition of proteins: a structural comparison for flexible proteins and predicted protein structures.

Gaussian-weighted RMSD superposition of proteins: a structural comparison for flexible proteins and predicted protein structures.

http://www.wikidata.org/entity/Q24545785

about

Performance of the WeNMR CS-Rosetta3 web server in CASD-NMR Multilevel Precision-Based Rational Design of Chemical Inhibitors Targeting the Hydrophobic Cleft of Toxoplasma gondii Apical Membrane Antigen 1 (AMA1)FlexE: Using elastic network models to compare models of protein structure.UniAlign: protein structure alignment meets evolution.Ensemble-based evaluation for protein structure models.Robust probabilistic superposition and comparison of protein structures.The utility of geometrical and chemical restraint information extracted from predicted ligand-binding sites in protein structure refinement Methods of protein structure comparison.eThread: a highly optimized machine learning-based approach to meta-threading and the modeling of protein tertiary structures.Event detection and sub-state discovery from biomolecular simulations using higher-order statistics: application to enzyme adenylate kinase.CSAR benchmark exercise 2011-2012: evaluation of results from docking and relative ranking of blinded congeneric series Improving 3D structure prediction from chemical shift data.Using least median of squares for structural superposition of flexible proteins Three dimensional shape comparison of flexible proteins using the local-diameter descriptor.IDSS: deformation invariant signatures for molecular shape comparison Modeling activated states of GPCRs: the rhodopsin template.Using diffusion distances for flexible molecular shape comparison.The substrate-driven transition to an inward-facing conformation in the functional mechanism of the dopamine transporter.Fusion of self-assembling amphipathic oligopeptides with cyclodextrin glycosyltransferase improves 2-O-D-glucopyranosyl-L-ascorbic acid synthesis with soluble starch as the glycosyl donor T-Analyst: a program for efficient analysis of protein conformational changes by torsion angles 3DMolNavi: a web-based retrieval and navigation tool for flexible molecular shape comparison.BioSuper: a web tool for the superimposition of biomolecules and assemblies with rotational symmetry.Buried ionizable networks are an ancient hallmark of G protein-coupled receptor activation Evolutionary Conserved Positions Define Protein Conformational Diversity Ion-controlled conformational dynamics in the outward-open transition from an occluded state of LeuT.Overcoming sequence misalignments with weighted structural superposition Methemoglobin Formation and Characterization of Hemoglobin Adducts of Carcinogenic Aromatic Amines and Heterocyclic Aromatic Amines.ViewMotions Rainbow: a new method to illustrate molecular motions in proteins Strain analysis of protein structures and low dimensionality of mechanical allosteric couplings.Lessons Learned over Four Benchmark Exercises from the Community Structure-Activity Resource.MSMBuilder2: Modeling Conformational Dynamics at the Picosecond to Millisecond Scale.Consistent improvement of cross-docking results using binding site ensembles generated with elastic network normal modes.iMODS: internal coordinates normal mode analysis server.Optimal superpositioning of flexible molecule ensembles.Probing the intermolecular interactions of PPARγ-LBD with polyunsaturated fatty acids and their anti-inflammatory metabolites to infer most potential binding moieties.Discerning intersecting fusion-activation pathways in the Nipah virus using machine learning.Improving methyl parathion hydrolase to enhance its chlorpyrifos-hydrolysing efficiency.Enhanced thermal stability and specific activity of Pseudomonas aeruginosa lipoxygenase by fusing with self-assembling amphipathic peptides.Predicting Displaceable Water Sites Using Mixed-Solvent Molecular Dynamics.Comparing pharmacophore models derived from crystallography and NMR ensembles.

P2860

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P2860

Gaussian-weighted RMSD superposition of proteins: a structural comparison for flexible proteins and predicted protein structures.

http://www.wikidata.org/entity/Q24545785

description

2006 nî lūn-bûn

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2006 թուականի Մարտին հրատարակուած գիտական յօդուած

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2006 թվականի մարտին հրատարակված գիտական հոդված

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2006年の論文

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Gaussian-weighted RMSD superpo ...... d predicted protein structures

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Gaussian-weighted RMSD superpo ...... predicted protein structures.

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Gaussian-weighted RMSD superpo ...... predicted protein structures.

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Gaussian-weighted RMSD superpo ...... d predicted protein structures

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Gaussian-weighted RMSD superpo ...... predicted protein structures.

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Gaussian-weighted RMSD superpo ...... predicted protein structures.

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Gaussian-weighted RMSD superpo ...... d predicted protein structures

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Gaussian-weighted RMSD superpo ...... predicted protein structures.

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Gaussian-weighted RMSD superpo ...... predicted protein structures.

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BIOPHYSJ.105.066654

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Biophysical Journal

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Gaussian-weighted RMSD superpo ...... predicted protein structures.

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Heather A Carlson

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Kelly L Damm

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P2860

Using 3D Hidden Markov Models that explicitly represent spatial coordinates to model and compare protein structures

The Protein Data Bank

The morph server: a standardized system for analyzing and visualizing macromolecular motions in a database framework.

A database of macromolecular motions

LGA: A method for finding 3D similarities in protein structures

The structural alignment between two proteins: is there a unique answer?

MolMovDB: analysis and visualization of conformational change and structural flexibility

Structure of a Ran-binding domain complexed with Ran bound to a GTP analogue: implications for nuclear transport

Structure of a transcribing T7 RNA polymerase initiation complex

Structure of a mutant EF-G reveals domain III and possibly the fusidic acid binding site

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4558-4573

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12

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7214328

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16565070

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protein structure

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