Curved DNA without A-A: experimental estimation of all 16 DNA wedge angles - Test2 - elhamkhani - TriplyDB

Curved DNA without A-A: experimental estimation of all 16 DNA wedge angles

Curved DNA without A-A: experimental estimation of all 16 DNA wedge angles

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3D reconstruction and comparison of shapes of DNA minicircles observed by cryo-electron microscopy A-tract clusters may facilitate DNA packaging in bacterial nucleoid.Curved DNA molecules migrate anomalously slowly in free solution.Mechanics of the IL2RA gene activation revealed by modeling and atomic force microscopy Structural origins of adenine-tract bending DNA A-tract bending in three dimensions: Solving the dA4T4 vs. dT4A4 conundrum The scrunchworm hypothesis: transitions between A-DNA and B-DNA provide the driving force for genome packaging in double-stranded DNA bacteriophages Conservation of sequence in recombination signal sequence spacers DNA sequence-dependent deformability deduced from protein-DNA crystal complexes Label-free, atomic force microscopy-based mapping of DNA intrinsic curvature for the nanoscale comparative analysis of bent duplexes.A refined prediction method for gel retardation of DNA oligonucleotides from dinucleotide step parameters: reconciliation of DNA bending models with crystal structure data.An assessment of three dinucleotide parameters to predict DNA curvature by quantitative comparison with experimental data.Combined SSCP/duplex analysis by capillary electrophoresis for more efficient mutation detection.Potentiostatic deposition of DNA for scanning probe microscopy.Salmonella typhimurium PtsJ is a novel MocR-like transcriptional repressor involved in regulating the vitamin B6 salvage pathway.Histone acetylations mark origins of polycistronic transcription in Leishmania major.Small local variations in B-form DNA lead to a large variety of global geometries which can accommodate most DNA-binding protein motifs A systematic molecular dynamics study of nearest-neighbor effects on base pair and base pair step conformations and fluctuations in B-DNA.Analyzing DNA curvature and its impact on the ionic environment: application to molecular dynamics simulations of minicircles Sequence periodicity in nucleosomal DNA and intrinsic curvature.A single-stranded DNA binding protein binds the origin of replication of the duplex kinetoplast DNA Changing nucleosome positions through modification of the DNA rotational information Genome-scale computational analysis of DNA curvature and repeats in Arabidopsis and rice uncovers plant-specific genomic properties.The effect of intrinsic curvature on conformational properties of circular DNA.PromBase: a web resource for various genomic features and predicted promoters in prokaryotic genomes.Structural prediction of A- and B-DNA duplexes based on coordinates of the phosphorus atoms The structural code of cyanobacterial genomes.Hidden Markov models from molecular dynamics simulations on DNA.Intrinsic DNA bends: an organizer of local chromatin structure for transcription.High-affinity binding sites for histone H1 in plasmid DNA.Undulations enhance the effect of helical structure on DNA interactions.Dynamic bending rigidity of a 200-bp DNA in 4 mM ionic strength: a transient polarization grating study.Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. I. Research design and results on d(CpG) steps Intrinsic curvature in the VP1 gene of SV40: comparison of solution and gel results T-DNA integration into the Arabidopsis genome depends on sequences of pre-insertion sites.DNA curvature and flexibility in vitro and in vivo.Involvement of DNA curvature in intergenic regions of prokaryotes.Interplay of protein and DNA structure revealed in simulations of the lac operon.Time-resolved fluorescence resonance energy transfer studies of DNA bending in double-stranded oligonucleotides and in DNA-protein complexes.Effects of diaminopurine and inosine substitutions on A-tract induced DNA curvature. Importance of the 3'-A-tract junction.

P2860

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P2860

Curved DNA without A-A: experimental estimation of all 16 DNA wedge angles

http://www.wikidata.org/entity/Q24563875

description

1991 nî lūn-bûn

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1991 թուականի Մարտին հրատարակուած գիտական յօդուած

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1991 թվականի մարտին հրատարակված գիտական հոդված

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1991年の論文

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1991年論文

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1991年論文

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1991年論文

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1991年論文

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1991年論文

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1991年论文

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name

Curved DNA without A-A: experimental estimation of all 16 DNA wedge angles

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Curved DNA without A-A: experimental estimation of all 16 DNA wedge angles

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Curved DNA without A-A: experimental estimation of all 16 DNA wedge angles

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Curved DNA without A-A: experimental estimation of all 16 DNA wedge angles

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Curved DNA without A-A: experimental estimation of all 16 DNA wedge angles

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Curved DNA without A-A: experimental estimation of all 16 DNA wedge angles

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prefLabel

Curved DNA without A-A: experimental estimation of all 16 DNA wedge angles

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Curved DNA without A-A: experimental estimation of all 16 DNA wedge angles

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Curved DNA without A-A: experimental estimation of all 16 DNA wedge angles

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Proceedings of the National Academy of Sciences of the United States of America

P1476

Curved DNA without A-A: experimental estimation of all 16 DNA wedge angles

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P2093

A Bolshoy

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E N Trifonov

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P McNamara

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P2860

Critical comments on the one recent DNA bending model and its fit to electrophoretic data.

Calibration of DNA curvature and a unified description of sequence-directed bending.

Thymine dimers bend DNA.

The major adduct of the antitumor drug cis-diamminedichloroplatinum(II) with DNA bends the duplex by approximately equal to 40 degrees toward the major groove.

Synthetic curved DNA sequences can act as transcriptional activators in Escherichia coli

DNA and protein determinants of nucleosome positioning on sea urchin 5S rRNA gene sequences in vitro.

Structural basis for DNA bending

DNA bending at adenine . thymine tracts.

The pitch of chromatin DNA is reflected in its nucleotide sequence.

Determination of the extent of DNA bending by an adenine-thymine tract.

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2312-6

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scholarly article

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10.1073/PNAS.88.6.2312

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6

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88

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Rodney E. Harrington

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1991-03-15T00:00:00Z

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21150181

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2006170

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51221

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