UniPROBE, update 2011: expanded content and search tools in the online database of protein-binding microarray data on protein-DNA interactions
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Constructing 3D interaction maps from 1D epigenomes.Compound mouse mutants of bZIP transcription factors Mafg and Mafk reveal a regulatory network of non-crystallin genes associated with cataractTwo Forkhead transcription factors regulate cardiac progenitor specification by controlling the expression of receptors of the fibroblast growth factor and Wnt signaling pathwaysThe 2014 Nucleic Acids Research Database Issue and an updated NAR online Molecular Biology Database Collection.The ZIC gene family encodes multi-functional proteins essential for patterning and morphogenesis.ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data.RAP: accurate and fast motif finding based on protein-binding microarray data.Bayesian hierarchical model of protein-binding microarray k-mer data reduces noise and identifies transcription factor subclasses and preferred k-mersMapping functional transcription factor networks from gene expression data.Global Mapping of Transcription Factor Binding Sites by Sequencing Chromatin Surrogates: a Perspective on Experimental Design, Data Analysis, and Open ProblemsSaccharomyces genome database provides new regulation data.A comparative analysis of transcription factor binding models learned from PBM, HT-SELEX and ChIP data.UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactionsCLARE: Cracking the LAnguage of Regulatory Elements.Comprehensive identification and annotation of cell type-specific and ubiquitous CTCF-binding sites in the human genome.Cellular dissection of psoriasis for transcriptome analyses and the post-GWAS eraDMINDA: an integrated web server for DNA motif identification and analysesDNA motif elucidation using belief propagation.OnTheFly: a database of Drosophila melanogaster transcription factors and their binding sitesDNA methylation dynamics during ex vivo differentiation and maturation of human dendritic cells.Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights.A machine learning approach for identifying novel cell type-specific transcriptional regulators of myogenesis.Meta-profiles of gene expression during aging: limited similarities between mouse and human and an unexpectedly decreased inflammatory signature.Key regulators control distinct transcriptional programmes in blood progenitor and mast cells.Annotation of long non-coding RNAs expressed in collaborative cross founder mice in response to respiratory virus infection reveals a new class of interferon-stimulated transcriptsAn evolutionarily conserved enhancer regulates Bmp4 expression in developing incisor and limb bud.Predicting the human epigenome from DNA motifs.Haploinsufficiency of Hedgehog interacting protein causes increased emphysema induced by cigarette smoke through network rewiring.Integrative analysis of the zinc finger transcription factor Lame duck in the Drosophila myogenic gene regulatory networkModels of human core transcriptional regulatory circuitries.Myeloid malignancies with chromosome 5q deletions acquire a dependency on an intrachromosomal NF-κB gene networkGlobal analysis of Drosophila Cys₂-His₂ zinc finger proteins reveals a multitude of novel recognition motifs and binding determinants.Protein-DNA binding in the absence of specific base-pair recognitionThe majority of primate-specific regulatory sequences are derived from transposable elementsDissecting the psoriasis transcriptome: inflammatory- and cytokine-driven gene expression in lesions from 163 patientsA yeast one-hybrid and microfluidics-based pipeline to map mammalian gene regulatory networks.Contribution of distinct homeodomain DNA binding specificities to Drosophila embryonic mesodermal cell-specific gene expression programs.An improved SELEX-Seq strategy for characterizing DNA-binding specificity of transcription factor: NF-κB as an example.Modulation of epidermal transcription circuits in psoriasis: new links between inflammation and hyperproliferation.An integrative analysis of TFBS-clustered regions reveals new transcriptional regulation models on the accessible chromatin landscape
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P2860
UniPROBE, update 2011: expanded content and search tools in the online database of protein-binding microarray data on protein-DNA interactions
description
2011 nî lūn-bûn
@nan
2011 թուականի Յունուարին հրատարակուած գիտական յօդուած
@hyw
2011 թվականի հունվարին հրատարակված գիտական հոդված
@hy
2011年の論文
@ja
2011年論文
@yue
2011年論文
@zh-hant
2011年論文
@zh-hk
2011年論文
@zh-mo
2011年論文
@zh-tw
2011年论文
@wuu
name
UniPROBE, update 2011: expande ...... ta on protein-DNA interactions
@ast
UniPROBE, update 2011: expande ...... ta on protein-DNA interactions
@en
UniPROBE, update 2011: expande ...... ta on protein-DNA interactions
@nl
type
label
UniPROBE, update 2011: expande ...... ta on protein-DNA interactions
@ast
UniPROBE, update 2011: expande ...... ta on protein-DNA interactions
@en
UniPROBE, update 2011: expande ...... ta on protein-DNA interactions
@nl
prefLabel
UniPROBE, update 2011: expande ...... ta on protein-DNA interactions
@ast
UniPROBE, update 2011: expande ...... ta on protein-DNA interactions
@en
UniPROBE, update 2011: expande ...... ta on protein-DNA interactions
@nl
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UniPROBE, update 2011: expande ...... ta on protein-DNA interactions
@en
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Kimberly Robasky
Martha L Bulyk
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10.1093/NAR/GKQ992
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Database issue
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2011-01-01T00:00:00Z