Transcriptome-wide sequencing reveals numerous APOBEC1 mRNA-editing targets in transcript 3' UTRs - Test2 - elhamkhani - TriplyDB

Transcriptome-wide sequencing reveals numerous APOBEC1 mRNA-editing targets in transcript 3' UTRs

Transcriptome-wide sequencing reveals numerous APOBEC1 mRNA-editing targets in transcript 3' UTRs

http://www.wikidata.org/entity/Q24618983

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AID and APOBECs span the gap between innate and adaptive immunity High levels of RNA-editing site conservation amongst 15 laboratory mouse strains Translating the epitranscriptome Rapid and dynamic transcriptome regulation by RNA editing and RNA modifications AID/APOBEC deaminases and cancer Molecular mechanism and clinical impact of APOBEC3B-catalyzed mutagenesis in breast cancer C to U RNA editing mediated by APOBEC1 requires RNA-binding protein RBM47 The dynamic epitranscriptome: A to I editing modulates genetic information A genome-wide map of hyper-edited RNA reveals numerous new sites Darned in 2013: inclusion of model organisms and linking with Wikipedia Association analyses of East Asian individuals and trans-ancestry analyses with European individuals reveal new loci associated with cholesterol and triglyceride levels.Transcript diversification in the nervous system: a to I RNA editing in CNS function and disease development BM-Map: an efficient software package for accurately allocating multireads of RNA-sequencing data.Genome-wide analysis of differential RNA editing in epilepsy.GENE-counter: a computational pipeline for the analysis of RNA-Seq data for gene expression differences.RDDpred: a condition-specific RNA-editing prediction model from RNA-seq data.Functions and regulation of the APOBEC family of proteins Upregulation of the microRNA cluster at the Dlk1-Dio3 locus in lung adenocarcinoma Chemical and structural effects of base modifications in messenger RNA.A tour through the transcriptional landscape of platelets.The RNA-editing enzyme APOBEC1 requires heterogeneous nuclear ribonucleoprotein Q isoform 6 for efficient interaction with interleukin-8 mRNA.Genome-wide identification and functional analysis of Apobec-1-mediated C-to-U RNA editing in mouse small intestine and liver Bioinformatic analysis of barcoded cDNA libraries for small RNA profiling by next-generation sequencing.A novel computational strategy to identify A-to-I RNA editing sites by RNA-Seq data: de novo detection in human spinal cord tissue Increased frequency of single base substitutions in a population of transcripts expressed in cancer cells.APOBEC4 Enhances the Replication of HIV-1.Combinatorial anti-HIV gene therapy: using a multipronged approach to reach beyond HAART Peregrine: A rapid and unbiased method to produce strand-specific RNA-Seq libraries from small quantities of starting material.High-resolution genetic mapping in the diversity outbred mouse population identifies Apobec1 as a candidate gene for atherosclerosis.Incorporating alternative splicing and mRNA editing into the genetic analysis of complex traits.Transcriptome analyses of the human retina identify unprecedented transcript diversity and 3.5 Mb of novel transcribed sequence via significant alternative splicing and novel genes Widespread RNA and DNA sequence differences in the human transcriptome.RNA-Seq: Improving Our Understanding of Retinal Biology and Disease.Reassessment of murine APOBEC1 as a retrovirus restriction factor in vivo.AID/APOBEC-network reconstruction identifies pathways associated with survival in ovarian cancer.RNA editing of protein sequences: a rare event in human transcriptomes JACUSA: site-specific identification of RNA editing events from replicate sequencing data.Intestine-specific expression of Apobec-1 rescues apolipoprotein B RNA editing and alters chylomicron production in Apobec1 -/- mice.Role of the gut in lipid homeostasis Genetic Architectures of Quantitative Variation in RNA Editing Pathways

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Transcriptome-wide sequencing reveals numerous APOBEC1 mRNA-editing targets in transcript 3' UTRs

http://www.wikidata.org/entity/Q24618983

description

2011 nî lūn-bûn

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2011 թուականի Փետրուարին հրատարակուած գիտական յօդուած

@hyw

2011 թվականի փետրվարին հրատարակված գիտական հոդված

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2011年の論文

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2011年学术文章

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2011年学术文章

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2011年学术文章

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2011年学术文章

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2011年学术文章

@zh-sg

2011年學術文章

@yue

name

Transcriptome-wide sequencing ...... targets in transcript 3' UTRs

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Transcriptome-wide sequencing ...... targets in transcript 3' UTRs

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Transcriptome-wide sequencing ...... targets in transcript 3' UTRs

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type

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Transcriptome-wide sequencing ...... targets in transcript 3' UTRs

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Transcriptome-wide sequencing ...... targets in transcript 3' UTRs

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Transcriptome-wide sequencing ...... targets in transcript 3' UTRs

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prefLabel

Transcriptome-wide sequencing ...... targets in transcript 3' UTRs

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Transcriptome-wide sequencing ...... targets in transcript 3' UTRs

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Transcriptome-wide sequencing ...... targets in transcript 3' UTRs

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Nature Structural & Molecular Biology

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Transcriptome-wide sequencing ...... targets in transcript 3' UTRs

@en

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Brad R Rosenberg

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Claire E Hamilton

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F Nina Papavasiliou

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Michael M Mwangi

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Scott Dewell

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Mapping and quantifying mammalian transcriptomes by RNA-Seq

Molecular cloning of apobec-1 complementation factor, a novel RNA-binding protein involved in the editing of apolipoprotein B mRNA.

Purification and molecular cloning of a novel essential component of the apolipoprotein B mRNA editing enzyme-complex

Evolutionary origins of apoB mRNA editing: catalysis by a cytidine deaminase that has acquired a novel RNA-binding motif at its active site

Dimeric structure of a human apolipoprotein B mRNA editing protein and cloning and chromosomal localization of its gene

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes.

AU-rich elements and associated factors: are there unifying principles?

The neurofibromatosis type I messenger RNA undergoes base-modification RNA editing

MicroRNA targeting specificity in mammals: determinants beyond seed pairing

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230-6

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1116301

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10.1038/NSMB.1975

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2

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18

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Nina Papavasiliou

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2011-02-01T00:00:00Z

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49777526

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1011803726

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21258325

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structural biology

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3075553

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