Comparative genomics boosts target prediction for bacterial small RNAs - Test2 - elhamkhani - TriplyDB

Comparative genomics boosts target prediction for bacterial small RNAs

Comparative genomics boosts target prediction for bacterial small RNAs

http://www.wikidata.org/entity/Q24621557

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Global RNA recognition patterns of post-transcriptional regulators Hfq and CsrA revealed by UV crosslinking in vivo Riboregulation in plant-associated α-proteobacteria Experimental approaches to identify small RNAs and their diverse roles in bacteria--what we have learnt in one decade of MicA research Regulatory RNAs in photosynthetic cyanobacteria CopraRNA and IntaRNA: predicting small RNA targets, networks and interaction domains The target spectrum of SdsR small RNA in Salmonella A nitric oxide regulated small RNA controls expression of genes involved in redox homeostasis in Bacillus subtilis Bioinformatics of prokaryotic RNAs Differential expression of small RNAs from Burkholderia thailandensis in response to varying environmental and stress conditions Small Regulatory RNAs of Rickettsia conorii An accessibility-incorporated method for accurate prediction of RNA-RNA interactions from sequence data.Involvement of Enterococcus faecalis small RNAs in stress response and virulence.The small regulatory RNA SyR1/PsrR1 controls photosynthetic functions in cyanobacteria.Identification of metE as a second target of the sRNA scr5239 in Streptomyces coelicolor.Non-coding RNA regulation in pathogenic bacteria located inside eukaryotic cells.The sRNA NsiR4 is involved in nitrogen assimilation control in cyanobacteria by targeting glutamine synthetase inactivating factor IF7.Large-scale mapping of sequence-function relations in small regulatory RNAs reveals plasticity and modularity.IntaRNA 2.0: enhanced and customizable prediction of RNA-RNA interactions.The Rsm regulon of plant growth-promoting Pseudomonas fluorescens SS101: role of small RNAs in regulation of lipopeptide biosynthesis A stress-induced small RNA modulates alpha-rhizobial cell cycle progression.How do base-pairing small RNAs evolve?Small RNA Transcriptome of the Oral Microbiome during Periodontitis Progression.sRNA-Mediated Regulation of P-Fimbriae Phase Variation in Uropathogenic Escherichia coli.Bacterial small RNAs in the Genus Rickettsia.Comprehensive prediction of lncRNA-RNA interactions in human transcriptome.Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions.A Regulatory Circuit Composed of a Transcription Factor, IscR, and a Regulatory RNA, RyhB, Controls Fe-S Cluster Delivery.Differentiation of ncRNAs from small mRNAs in Escherichia coli O157:H7 EDL933 (EHEC) by combined RNAseq and RIBOseq - ryhB encodes the regulatory RNA RyhB and a peptide, RyhP rNAV 2.0: a visualization tool for bacterial sRNA-mediated regulatory networks mining Identification of bacterial sRNA regulatory targets using ribosome profiling.sRNATarBase 3.0: an updated database for sRNA-target interactions in bacteria.Diverse mechanisms of post-transcriptional repression by the small RNA regulator of glucose-phosphate stress.Transcript degradation and noise of small RNA-controlled genes in a switch activated network in Escherichia coli A Prophage-Encoded Small RNA Controls Metabolism and Cell Division in Escherichia coli.Systematic and functional identification of small non-coding RNAs associated with exogenous biofuel stress in cyanobacterium Synechocystis sp. PCC 6803.Riboregulators and the role of Hfq in photosynthetic bacteria.Biological and bioinformatical approaches to study crosstalk of long-non-coding RNAs and chromatin-modifying proteins.Small RNA functions in carbon metabolism and virulence of enteric pathogens.A game of tag: MAPS catches up on RNA interactomes.An assessment of bacterial small RNA target prediction programs

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P2860

Comparative genomics boosts target prediction for bacterial small RNAs

http://www.wikidata.org/entity/Q24621557

description

2013 nî lūn-bûn

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2013 թուականի Սեպտեմբերին հրատարակուած գիտական յօդուած

@hyw

2013 թվականի սեպտեմբերին հրատարակված գիտական հոդված

@hy

2013年の論文

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2013年論文

@yue

2013年論文

@zh-hant

2013年論文

@zh-hk

2013年論文

@zh-mo

2013年論文

@zh-tw

2013年论文

@wuu

name

Comparative genomics boosts target prediction for bacterial small RNAs

@ast

Comparative genomics boosts target prediction for bacterial small RNAs

@en

Comparative genomics boosts target prediction for bacterial small RNAs

@nl

type

label

Comparative genomics boosts target prediction for bacterial small RNAs

@ast

Comparative genomics boosts target prediction for bacterial small RNAs

@en

Comparative genomics boosts target prediction for bacterial small RNAs

@nl

prefLabel

Comparative genomics boosts target prediction for bacterial small RNAs

@ast

Comparative genomics boosts target prediction for bacterial small RNAs

@en

Comparative genomics boosts target prediction for bacterial small RNAs

@nl

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PNAS.1303248110

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Proceedings of the National Academy of Sciences of the United States of America

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Comparative genomics boosts target prediction for bacterial small RNAs

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Patrick R Wright

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P2860

Fast and effective prediction of microRNA/target duplexes

Target prediction for small, noncoding RNAs in bacteria

RNApredator: fast accessibility-based prediction of sRNA targets

Reprogramming of anaerobic metabolism by the FnrS small RNA

RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)

The base-pairing RNA spot 42 participates in a multioutput feedforward loop to help enact catabolite repression in Escherichia coli

Two antisense RNAs target the transcriptional regulator CsgD to inhibit curli synthesis

Translational regulation of gene expression by an anaerobically induced small non-coding RNA in Escherichia coli

Small RNA-induced differential degradation of the polycistronic mRNA iscRSUA

IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions

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110

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Wolfgang R Hess

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