ScerTF: a comprehensive database of benchmarked position weight matrices for Saccharomyces species
about
The Role of Transcription Factors at Antisense-Expressing Gene Pairs in Yeast.Assessment of algorithms for inferring positional weight matrix motifs of transcription factor binding sites using protein binding microarray data.Computational discovery of regulatory elements in a continuous expression space.MotifLab: a tools and data integration workbench for motif discovery and regulatory sequence analysis.RAP: accurate and fast motif finding based on protein-binding microarray data.Mapping functional transcription factor networks from gene expression data.Saccharomyces genome database provides new regulation data.Discrimination between thermodynamic models of cis-regulation using transcription factor occupancy data.Global alterations of the transcriptional landscape during yeast growth and development in the absence of Ume6-dependent chromatin modification.DNA motif elucidation using belief propagation.Transcription factor regulation and chromosome dynamics during pseudohyphal growthThe Hsp90-dependent proteome is conserved and enriched for hub proteins with high levels of protein-protein connectivity.Genetics of single-cell protein abundance variation in large yeast populations.The conserved histone deacetylase Rpd3 and its DNA binding subunit Ume6 control dynamic transcript architecture during mitotic growth and meiotic development.Model-driven mapping of transcriptional networks reveals the circuitry and dynamics of virulence regulation.Contribution of Sequence Motif, Chromatin State, and DNA Structure Features to Predictive Models of Transcription Factor Binding in Yeast.ChEC-seq kinetics discriminates transcription factor binding sites by DNA sequence and shape in vivo.motifbreakR: an R/Bioconductor package for predicting variant effects at transcription factor binding sitesCombinatorial Cis-regulation in Saccharomyces Species.Mapping yeast transcriptional networksNdt80 activates the meiotic ORC1 transcript isoform and SMA2 via a bi-directional middle sporulation element in Saccharomyces cerevisiae.Massively parallel synthetic promoter assays reveal the in vivo effects of binding site variants.Model-based transcriptome engineering promotes a fermentative transcriptional state in yeast.Large-scale mapping of gene regulatory logic reveals context-dependent repression by transcriptional activators.High-resolution mapping of transcription factor binding sites on native chromatinMapping the fine structure of a eukaryotic promoter input-output function.MotifHyades: Expectation Maximization for de novo DNA Motif Pair Discovery on Paired Sequences.The conserved histone deacetylase Rpd3 and the DNA binding regulator Ume6 repress BOI1's meiotic transcript isoform during vegetative growth in Saccharomyces cerevisiae.Mot1 redistributes TBP from TATA-containing to TATA-less promoters.A new exhaustive method and strategy for finding motifs in ChIP-enriched regions.Correspondence: DNA shape is insufficient to explain binding.Developmentally regulated internal transcription initiation during meiosis in budding yeast.Systematic prediction of DNA shape changes due to CpG methylation explains epigenetic effects on protein-DNA binding.Evidence for a hierarchical transcriptional circuit in Drosophila male germline involving testis-specific TAF and two gene-specific transcription factors, Mod and Acj6.Stochastic tuning of gene expression enables cellular adaptation in the absence of pre-existing regulatory circuitry.Comprehensive, high-resolution binding energy landscapes reveal context dependencies of transcription factor binding.Intrinsic cooperativity potentiates parallel -regulatory evolution
P2860
Q27931130-8BC16A36-335C-4204-BD71-B8942F634DC5Q30571694-94603A32-D796-4FB2-9028-952FB6F1E803Q30580501-778E7394-8399-4987-A96D-A571131215DFQ30586232-61E400D0-0188-46B0-B616-7D491C0AB3F3Q30596834-EAB1E4E6-915C-4B30-9EF8-B2D2FA66E0B3Q30620797-4BFB44F6-C88D-426B-82EE-DEA3A2A3AB93Q30699640-55A70322-F63B-48AE-97EE-3FD32B80F263Q30703913-2DF0FDD5-1EBB-468A-A61B-06222381914BQ33791794-66203713-932E-401B-895E-30DB89C24C05Q34037366-B67E1D34-6F7D-4184-B307-393CB1FEC70DQ34104722-E375B612-D62B-49B3-A624-056B28F90D32Q34472616-A54AB2F4-1863-44E4-98EC-D9211FA1D080Q34846880-9FCCF3BD-12E4-47EE-B679-629946038EC3Q34882908-13CE6D74-48DE-48B7-B1FA-C23A4BC53ED4Q35561962-72103527-5C95-4E42-B799-B0C542E77D2EQ35751160-B801AC37-C2F7-41D4-B3B4-F664C6578358Q36200857-0ADD473E-FB72-4BC7-99D5-438DF210BDD2Q36300830-7D741F98-3B4C-4DBE-B9E6-C9586E59A75AQ36648728-F307FE73-767A-4A1D-96B4-546BDBE14D2BQ37142704-078E2BEB-FE04-457E-A1E9-3470F0BD67BFQ37237998-8F9FA80A-FD64-4DC6-96CD-A352CBF0E1B8Q37272456-F44597D1-D0FC-4AA1-81A3-7A1F5B05FF0EQ37451136-DBCA6CC7-02C8-43C0-82FD-A9AC8EFBF7D5Q37548523-2D3ECEB5-813B-467D-B4BB-8783E63BE2DDQ37593221-72D627A2-F5CF-4F8A-9FA3-4C1383AA7EC5Q38313315-AB6209A5-31A3-4CDC-9F80-257162803E2EQ38699647-4FCECE4D-EDC1-44C6-8935-8CD388FA44ECQ41362570-48636B71-A0DD-4D68-AA43-771E0131522BQ41867668-FFD0AB6C-557F-44C4-9A5D-C6D2D6E58A2DQ41890790-1148F4E1-F327-4628-9FE7-180EA85A3CC2Q42211760-648B9E39-2CD3-4426-9E37-D28AC7D40A37Q47161456-5D2C80F2-235C-4EF4-B299-D31F072AF48FQ48096273-0AD0B6D5-CE4A-4862-AF6C-E7FB992C709BQ49859624-D38F88DE-95F3-4DE6-8D21-42E895FD35C9Q52605047-17205BE1-D6CB-48D2-BC32-E496B15C7872Q55225940-C9039381-38E8-4D96-B976-F17756766CB5Q58752936-A77498B7-4694-4C3C-9D03-1A775908C795
P2860
ScerTF: a comprehensive database of benchmarked position weight matrices for Saccharomyces species
description
2012 nî lūn-bûn
@nan
2012 թուականի Յունուարին հրատարակուած գիտական յօդուած
@hyw
2012 թվականի հունվարին հրատարակված գիտական հոդված
@hy
2012年の論文
@ja
2012年論文
@yue
2012年論文
@zh-hant
2012年論文
@zh-hk
2012年論文
@zh-mo
2012年論文
@zh-tw
2012年论文
@wuu
name
ScerTF: a comprehensive databa ...... ices for Saccharomyces species
@ast
ScerTF: a comprehensive databa ...... ices for Saccharomyces species
@en
ScerTF: a comprehensive databa ...... ices for Saccharomyces species
@nl
type
label
ScerTF: a comprehensive databa ...... ices for Saccharomyces species
@ast
ScerTF: a comprehensive databa ...... ices for Saccharomyces species
@en
ScerTF: a comprehensive databa ...... ices for Saccharomyces species
@nl
prefLabel
ScerTF: a comprehensive databa ...... ices for Saccharomyces species
@ast
ScerTF: a comprehensive databa ...... ices for Saccharomyces species
@en
ScerTF: a comprehensive databa ...... ices for Saccharomyces species
@nl
P2860
P3181
P356
P1476
ScerTF: a comprehensive databa ...... ices for Saccharomyces species
@en
P2093
Aaron T Spivak
Gary D Stormo
P2860
P304
P3181
P356
10.1093/NAR/GKR1180
P407
P433
Database issue
P577
2012-01-01T00:00:00Z